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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCAGTATGAAACTGAGGAGGGAAAGAAAAACATTGAGGCACAGCTGGAGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagaccacattaatgtgattgcatgcttttctttgttttccttgcttcattttatataatggttgttatatatatatatatatatgtttagcact...

Basic information

species Glycine max
transcript GLYMA20G30810.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0072g00340.t01 (Vitis vinifera), 5'ss of exon 4
AAAGCAGTATGAAACTGAGGAGGGAAAGAAAAACATTGAGGCACAGCTGGAGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagaccacatt----aatgtg-attgcatgcttttctttgttttccttgcttcattttatataa--tggttgttatatatatatatatatatgtttagcact
 ||||||||||| ||||| || || ||||||| |||  | ||||| ||||||||| |||| || |||||| ||||  |||| |||||||||||||| |||||| | | |    |||    ||  || | | |||  |||  ||  ||     |  |||| ||| | | |  || ||||  | |  |  | |   ||| ||||     
CAAGCAGTATGAGACTGAAGAAGGGAAGAAAAGCATCCAAGCACAACTGGAGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGgtactgatagtctattttttaagatgtactacattatttcattatttgatgctaattcagtttctttcaattgcttgtcgtgttcacttgt---tatttttat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316082|gb|FK008893.1|FK008893
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|42722893|gb|CK768792.1|CK768792
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|42722886|gb|CK768785.1|CK768785
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209721631|gb|BW671746.1|BW671746
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCA
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCA
EST: gi|192322557|gb|FK014678.1|FK014678
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAAT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAAT
EST: gi|209719747|gb|BW672122.1|BW672122
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|6915103|gb|AW396700.1|AW396700
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209722195|gb|BW651237.1|BW651237
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|7685794|gb|AW756442.1|AW756442
EST:     AGATACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCATGAATATGAGAGGGTTGTAGCAGAAGAGAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|7691770|gb|AW759891.1|AW759891
EST:     GAAACTGAAGAAGTATGCTACTGTGGTGTCGTGTTGTG-CTCACACCCAG                         ATCAGGAAAATGAAAGGATTGAAGCAGAATAATA-CGCATATCATGGAAAT
genomic: GAAACTGAAGAAGTATGCTACTGTGGT-TCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAA-AGCCCATATCATGGAAAT
EST: gi|17402057|gb|BM178839.1|BM178839
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|14205438|gb|BG839116.1|BG839116
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|151401421|gb|EV271235.1|EV271235
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCAT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCAT
EST: gi|26058642|gb|CA801556.1|CA801556
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|120492791|gb|EH220958.1|EH220958
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|9264585|gb|BE352732.1|BE352732
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|298172762|gb|HO020316.1|HO020316
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|57574667|gb|CX547642.1|CX547642
EST:     AGAAACTGAGGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209724107|gb|BW659639.1|BW659639
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|18040885|gb|BM309179.1|BM309179
EST:     AGAAACTGAAGAAGTATGCTACTGTGGNTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|26058970|gb|CA801884.1|CA801884
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCANGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|17021933|gb|BM092967.1|BM092967
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAA
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAA
EST: gi|10236190|gb|BE805078.1|BE805078
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|24205367|gb|BU964620.1|BU964620
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|13480764|gb|BG510107.1|BG510107
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|9440403|gb|BE440909.1|BE440909
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCANGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGGAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|42722708|gb|CK768607.1|CK768607
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209699599|gb|BW655705.1|BW655705
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|6482209|gb|AW201480.1|AW201480
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|12773466|gb|BG238393.1|BG238393
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTNTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCANAAGAAAGCC
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCC
EST: gi|11414072|gb|BF426083.1|BF426083
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|151410170|gb|EV279978.1|EV279978
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAAT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAAT
EST: gi|207833255|gb|GD802230.1|GD802230
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCCCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|254326767|gb|GR836376.1|GR836376
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|7588593|gb|AW704385.1|AW704385
EST:     GTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: GTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|213608082|gb|DB963026.1|DB963026
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|23727790|gb|BU761931.1|BU761931
EST:     AGAAACTGAAGAAGTATGCTACTGTGGGTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCC-ATATCATGGGAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209708350|gb|BW683940.1|BW683940
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|151398400|gb|EV268271.1|EV268271
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAG-AAAATGAAAGGGTTGAAGCA
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCA
EST: gi|193583445|gb|FK539779.1|FK539779
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|18690672|gb|BM519520.1|BM519520
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|42722786|gb|CK768685.1|CK768685
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagac ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGCAGTATGAAACTGAGGAGGGAAAGAAAAACATTGAGGCACAGCTGGAGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGgtattaagaccacattaatgtgattgcatgcttttctttgttttccttgcttcattttatataatggttgttatatatatatatatatatgtttagcact

- - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT