Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagctaatgatgtattgcattctttaactgtttacatgtaacgttctcttattatatactatcctttatctatctaactatataatattttctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT

Basic information

species Glycine max
transcript GLYMA20G30810.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 3'ss of exon 3
aagctaatgatgtattgc--attctttaactgtttacatgtaacgttc-tcttattatatactatcctttatctatctaactatataatattttctata----tcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT
       ||   | | ||  |  ||||||   |     | ||   ||| ||| | |||  |   | ||  |   || ||||  | | || |||   ||     ||||| || ||||||||||| || |||||| ||||||| ||||||||||| ||||| || ||  |||||||  ||||||  |||||||| ||||| |||||  |
-------tggcctttagccaagactttaatactaagactttagtattcatctgaatatgcatactactgaagagatttaaccttgtcatttttctaatgcttttcagAACTCCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAGACACCTCCTATTGTCGTTGTTGGACTTGTGGCCTATGTGAAGACTCCACGTGGCTT

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os12g07010.1 (Oryza sativa), 3'ss of exon 3
aagctaatgatgtattgcattctttaactgtttacatgtaacgttctcttattatatactatcctttatctatctaactatataatattttctatat-cagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT
               |   ||  |   |   || ||| |   ||||  |     ||| |    ||| | |    ||||   ||| | ||  | || | ||||||| |||||||||||||| || ||| ||||||| || || |||||||||||  | || ||||||||  | ||||  ||||| || || || ||||| ||
--------------gtaagttgctctgcatcttgcat-tcgtgttcattggaggtatgc----cttgaacatattaacaccata-tgttgacaatgtgcagAGCTCCACAAGAAGGAAACCTGCGAGGCTGTTACCATCATCGAGACCCCTCCGCTTGTCATTGTTGGACTCGTGGCCTATGTCAAGACACCTCGTGGACT

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G361049_T01 (Zea mays), 3'ss of exon 9
aagctaatgatgtattgcattctttaact-gtttacatgtaacgttctc-ttattatatactatcctttatctatctaactatataatattttctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTC-CCCGTGGTCT------
  | | ||  |||   |   ||   ||   |   || ||| | | | |   ||| ||  |   ||||     | ||  | | |   |  | |   || | |   |  | |  |       | |  || ||    ||  |   || | ||    |  | |  |      | |  |  |||| |   | ||||    |  |  |       
-tgttgattttgtgcagagctccacaagaaggaaacttgtgaggctgtgactatcattgagactcctccccttgtc--attgtcggacttgtggaatgtgaagACCCCCCGTGG------CCTACGAACCCTCAACTCTGTCTGGGCCCAACACCTTAGCGAAGAAGTGCGGAGAAGGTTCTACAAGAACTGGTGCAAGAGCAAGAAGA

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G801409_T04 (Zea mays), 3'ss of exon 2
aagctaatgatgtattgcattctttaactgtttacatgtaacgttctcttat---tatatactatc---ctttatctatctaactatataatattttctatatc---agAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT
          ||| |     ||   ||||| || ||   |    ||||   |   |  |||| ||    ||  ||     |||||        |  |  || ||   ||| || || ||||||||||| |||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
---------ctgtttgaatatccacaactgcttgcacccatgaatctcaagtatatggataccatttcactccattatcgtaactgctctgcctacttgatttctacagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G135727_T03 (Zea mays), 3'ss of exon 3
aagctaatgatgtattgcattctttaactgtttacatgtaacgttctcttat---tatatactatc---ctttatctatctaactatataatattttctata---tcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT
          ||| |     ||   ||||| || ||   |    ||||   |   |  |||| ||    ||  ||     |||||        |  |  ||    ||||| || || ||||||||||| |||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
---------ctgtttgaatatccacaactgcttgcacccatgaatctcgagtacatggataccatttcactccattatcgtaactgctcttcctacttgatttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G324314_T05 (Zea mays), 3'ss of exon 3
aagctaatgatgtattgcat-tctttaactgtttacatgtaacgttctcttat---tatatactatc---ctttatctatctaactatataatattttctatatc---agAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT
          | | ||| || ||   ||||| || ||   |    ||||   |   |  |||| ||    ||  ||     |||||        |  |  || ||   ||| || || ||||||||||| |||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
----------tctgttgaatatccacaactgcttgcacccatgaatctcgagtatatggataccatttcactccattatcgtaactgctctgcctacttgatttctacagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G132968_T02 (Zea mays), 3'ss of exon 3
aagctaatgatgtattgcattctttaactgtttacatgtaacgttctcttat---tatatactatc---ctttatctatctaactatataatattttctata---tcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT
          ||| |     ||   ||||| || ||   |    ||||   |   |  |||| ||    ||  ||   | |||||        |  |  ||    ||||| || || ||||||||||| |||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
---------ctgtttgaatatccacaactgcttgcacccatgaatctcaagtacatggataccatttcactccattattgtaactgctcttcctacttgatttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G109677_T03 (Zea mays), 3'ss of exon 5
aagctaatgatgtattgcattctttaactgtttacatgtaacgttctcttat---tatatactatc---ctttatctatctaactatataatattttctatatc---agAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT
          ||| |     ||   ||||| || ||   |    ||||   |   |  |||| ||    ||  ||     |||||        |  |  || ||   ||| || || ||||||||||| |||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
---------ctgtttgaatatccacaactgcttgcacccatgaatctcgagtatatggataccatttcactccattatcgtaactgctctgcctacttgatttctacagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 3
aagctaatgatgtattgcattctttaactgtttacatgtaacgttctctt-attatatactatcctttatctatctaactatataatattttctatat----cagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT
    |    ||  ||   | | |   |  | |  | || ||| || | |  |   |  || ||  |  |||||      ||| ||||| |    ||||    ||||||||||||||||||| ||||||||  ||||||||||| ||||||| ||||| ||||| || ||||| || |||| |||||| || ||||| ||||| ||
---ttttaaatacatcttagtatcacatcggt-gcttgaaactttttttccaacttgcacaatt-taaatctagtgctgtatctaataatactaatattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTCCTATGGTCATAGTTGGAGTGGTGGCTTATGTTAAGACTCCACGTGGCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316082|gb|FK008893.1|FK008893
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|42722893|gb|CK768792.1|CK768792
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|42722886|gb|CK768785.1|CK768785
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209721631|gb|BW671746.1|BW671746
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|192322557|gb|FK014678.1|FK014678
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209719747|gb|BW672122.1|BW672122
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|298167767|gb|HO013030.1|HO013030
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|6915103|gb|AW396700.1|AW396700
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209722195|gb|BW651237.1|BW651237
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|7685794|gb|AW756442.1|AW756442
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|7691770|gb|AW759891.1|AW759891
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|14205438|gb|BG839116.1|BG839116
EST:     CAAGGCTGGGRTGACTCGCATTGGGGGSGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|151401421|gb|EV271235.1|EV271235
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTGCAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|26058642|gb|CA801556.1|CA801556
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|298172762|gb|HO020316.1|HO020316
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|213606710|gb|DB972566.1|DB972566
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209724107|gb|BW659639.1|BW659639
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|18040885|gb|BM309179.1|BM309179
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|26058970|gb|CA801884.1|CA801884
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|17021933|gb|BM092967.1|BM092967
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|15814458|gb|BI786733.1|BI786733
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|24205367|gb|BU964620.1|BU964620
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|9440403|gb|BE440909.1|BE440909
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|42722708|gb|CK768607.1|CK768607
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|298164730|gb|HO014375.1|HO014375
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|4260059|gb|AI416555.1|AI416555
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209699599|gb|BW655705.1|BW655705
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|7926576|gb|AW832602.1|AW832602
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|12773466|gb|BG238393.1|BG238393
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209729021|gb|BW655039.1|BW655039
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|298191373|gb|HO038852.1|HO038852
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|31560975|gb|CD486813.1|CD486813
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209721346|gb|BW654540.1|BW654540
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|46492714|gb|CN472270.1|CN472270
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|151410170|gb|EV279978.1|EV279978
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|298178912|gb|HO024647.1|HO024647
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|8826799|gb|BE210529.1|BE210529
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACGAGAAGGAAACATGTGAGCCTGTGACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|213620200|gb|DB965450.1|DB965450
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|254326767|gb|GR836376.1|GR836376
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|213608082|gb|DB963026.1|DB963026
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|23727790|gb|BU761931.1|BU761931
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209708350|gb|BW683940.1|BW683940
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|151398400|gb|EV268271.1|EV268271
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTGCAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|13125697|gb|BG316267.1|BG316267
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|18690672|gb|BM519520.1|BM519520
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|17021885|gb|BM092919.1|BM092919
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|42722786|gb|CK768685.1|CK768685
EST:     TGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: TGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|4396841|gb|AI495838.1|AI495838
EST:     CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaacca ... tctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttattatatactatcctttatctatctaactatataatattttctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT
                          atctaac  putative branch site (score: 2)
                                        tattttct  putative PPT
                   tttatctatctaacta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagctaatgatgtattgcattctttaactgtttacatgtaacgttctcttattatatactatcctttatctatctaactatataatattttctatatcagAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCT

- gctaatg
- - - - - - - - gcattct
- - - - - - - - - - - - - - - - - catgtaa