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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga...

Basic information

species Glycine max
transcript GLYMA20G30810.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 2
--GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaa-gtaaaacaagatgctgttgtgttaaa-catgagtatgccga-
  |||||| |  | |||||| |||||||||||||||||||| |||||||| || || || || ||||| ||||||||  |  | || ||| | || || |||| | ||   |   ||  | |   |     |  | |  |||||  || |    | ||   ||| | |  |   ||  | || || |  |  |   ||  |  
AGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAGGCACGGATCCCTCGGCTTCCTCCCGAGGAAGCGCTCCTCCCGCCACCGCGGCAAGGgta-tgctcactcacctactctctctctctctctctt--ttgcttgtgcggtgctgtatttgtagagcttgcgccttgtatggtagagtagaaacttgttgga

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g07010.1 (Oryza sativa), 5'ss of exon 2
--GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattc--ttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga-
   ||||| |  | |||||| |||||||||||||||||||| ||||| || || || || || ||||| ||||||||  |  | || ||| | || || ||||  |   |  |||| |||     |  |  |||             ||| || |||| |  ||       ||| |||  |     |    |  |||||| | 
GTAAGGAGGAGGAAGATGTCGCACAGGAAGTTCGAGCACCCGAGGCATGGATCCCTCGGCTTCCTCCCGAGGAAGCGCTCCTCCCGCCACCGCGGCAAGGgtacgtgaatcctttgccttccacacgcttgattggtgatgcatgaattgcgagtttc-actgtccgtattgat-ctgaag-acggatttcgtttatgcccag

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G801409_T01 (Zea mays), 5'ss of exon 1
GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga
||||||   | ||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| | || || ||||   |     | |||||    || |   |        ||| |    |   |                                               
GAGGAGGGCA-GGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCcctcggcttccttcccaggaagcgctcctcccgtcaccgcggcaagggta-cgcgcgcatctcttactccctcttgttcgcttgccttgttccgatacgtg----------------------------------------------

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G109677_T03 (Zea mays), 5'ss of exon 4
--------GAGGAGAATA--AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga
        |||||| |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| | || || ||||   ||    | |||||    || |   ||  | |   |  |   |  |  |                                              
GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCcctcggcttccttcccaggaagcgctcctcccgtcaccgcggcaagggta-cgctcgcatctcttactccctctttgttcgcttgccttgtcccgatacgt----------------------------------------------

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G361049_T01 (Zea mays), 5'ss of exon 8
GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAA-AGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga
                     |  ||| |    |   ||    |  || ||  |     || |  |    | |  |||| |  || |    |||   |||  |   | |     | ||  |||   ||    |   |   | |    |    |||      |  |   ||| || |   |  |                
------------------ATTCTAGAAATCGTCGTGTCCTGATCCTGGATC--TAATTGTTTTATCGGAAATGATTGCTTCAGgtaaggaaggaggcaggcgaggatgtcgcaccgtaaattcgagcacccgaggca--cggttcccttggcttcctccccaggaagcgatcctctcccgccacc--------------

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G109677_T07 (Zea mays), 5'ss of exon 3
GAGGAGAATA--AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtga-atttctaaagtaaaacaagatgctgttg---tgttaaacatgagtatgccga
|||||| |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| | || || ||||   ||    | |||||    || |   ||  | |   |  |||   || |  | | |  | |||     | |  ||      ||| |  |     |     
GAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgta-cgctcgcatctcttactccctctttgttcgcttgcct--tgtcccgatacgtgtcatctgaaatgttctacccttcaacctttagaacttgaagtatta-

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G324314_T03 (Zea mays), 5'ss of exon 2
---GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtga-atttctaaagtaaaacaagatgctgttg---tgttaaacatgagtatgccga
   ||||||   | ||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| | || || ||||   |     | |||||    ||      |  | |   |  ||||  || |  | | |  | |||     | |  ||      ||| |  |     |     
GAAGAGGAGGGCA-GGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgta-cgcgcgcatctcttactccctccttgctcgcttgcct--tgttccgatacgtgttatctgaaatgttctacccttcaacctttagaacttgaagtatta-

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G132968_T02 (Zea mays), 5'ss of exon 2
GAGGAGAATA--AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga-------
|||||| |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | || ||| | || || ||||   |     | |||||    ||     ||  | |   |  |||   || |     | || |    | ||| | |    || | |||    |    ||       
GAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCGCGGCAAGGgta-cgcgcgcatctcttactccctccttgttcgcttgcct--tgtcccgattc----atgtcatctgaaatgttctacccttcagcatttagaacttgaagtatta

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G801409_T04 (Zea mays), 5'ss of exon 1
GAGGAGAATA--AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgct--gttgtgaatt-tctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga
|||||| |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| | || || ||||   |     | |||||    || |   |        ||| |  | |  |  |  ||| || |     |   | |     |   ||     |||||     
GAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgta-cgcgcgcatctcttactccctcttgttcgcttgccttgttccgatacgtgtcatctgaaatgttctacccttcaacctttagaacttgaagtattat--

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G135727_T03 (Zea mays), 5'ss of exon 2
--------GAGGAGAATA--AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga
        |||||| |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | || ||| | || || ||||   |     | |||||    ||     ||  | |   |  |||   || |                                               
GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCcctcggcttccttcccaggaagcgctcctcccgccaccgcggcaagggta-cgcgcgcatctcttactccctccttgttcgcttgcct--tgtcccgattcat--------------------------------------------

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G135727_T01 (Zea mays), 5'ss of exon 2
GAGGAGAATA--AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga-------
|||||| |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | || ||| | || || ||||   |     | |||||    ||     ||  | |   |  |||   || |     | || |    | ||| | |    || ||| |    |    ||       
GAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCGCGGCAAGGgta-cgcgcgcatctcttactccctccttgttcgcttgcct--tgtcccgattc----atgttatctgaaatgttctacccttcaacctttagaacttgaagtatta

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G324314_T05 (Zea mays), 5'ss of exon 2
--------GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga
        ||||||   | ||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| | || || ||||   |     | |||||    ||      |  | |   |  ||||  ||                                                 
GTAAGGAAGAGGAGGGCA-GGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCcctcggcttccttcccaggaagcgctcctcccgtcaccgcggcaagggta-cgcgcgcatctcttactccctccttgctcgcttgcct--tgttccgatacgt--------------------------------------------

upper sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g00340.t01 (Vitis vinifera), 5'ss of exon 2
GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaattt---ctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga
   ||| | ||| ||||| ||| ||||||| ||||| || ||||| || || || |||||| | || |||||||| ||||||||||| ||||||||||||| | | |   |   |||  |  | ||||| |  ||  ||  |  || ||  ||    |   ||  |     |||   |  | ||      |||| ||  | 
---GAGGAGAAGAATGTCGCACCGGAAGTTTGAGCATCCCAGGCATGGTTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgta-tacatggcttctttacatattatcaatcataatgttttttcatgagagcttacttttttgtttatagcaatgacatgctctttcttcagagt-tgttg-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316082|gb|FK008893.1|FK008893
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTACTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|42722893|gb|CK768792.1|CK768792
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|42722886|gb|CK768785.1|CK768785
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209721631|gb|BW671746.1|BW671746
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|192322557|gb|FK014678.1|FK014678
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209719747|gb|BW672122.1|BW672122
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|298167767|gb|HO013030.1|HO013030
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209722195|gb|BW651237.1|BW651237
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|7685794|gb|AW756442.1|AW756442
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|7691770|gb|AW759891.1|AW759891
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|14205438|gb|BG839116.1|BG839116
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCKGCTCGKCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGRTGACSCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|151401421|gb|EV271235.1|EV271235
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|26058642|gb|CA801556.1|CA801556
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|213606710|gb|DB972566.1|DB972566
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209724107|gb|BW659639.1|BW659639
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|18040885|gb|BM309179.1|BM309179
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|26058970|gb|CA801884.1|CA801884
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|17021933|gb|BM092967.1|BM092967
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|15814458|gb|BI786733.1|BI786733
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|24205367|gb|BU964620.1|BU964620
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|9440403|gb|BE440909.1|BE440909
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|42722708|gb|CK768607.1|CK768607
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|298164730|gb|HO014375.1|HO014375
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|4260059|gb|AI416555.1|AI416555
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209699599|gb|BW655705.1|BW655705
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|7926576|gb|AW832602.1|AW832602
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|12773466|gb|BG238393.1|BG238393
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209729021|gb|BW655039.1|BW655039
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|7042767|gb|AW472661.1|AW472661
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAG-CACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|298191373|gb|HO038852.1|HO038852
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|31560975|gb|CD486813.1|CD486813
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCAGTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209721346|gb|BW654540.1|BW654540
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCGTCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|46492714|gb|CN472270.1|CN472270
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|151410170|gb|EV279978.1|EV279978
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCGCAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|298178912|gb|HO024647.1|HO024647
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|8826799|gb|BE210529.1|BE210529
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|213620200|gb|DB965450.1|DB965450
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|254326767|gb|GR836376.1|GR836376
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|213608082|gb|DB963026.1|DB963026
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|23727790|gb|BU761931.1|BU761931
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209708350|gb|BW683940.1|BW683940
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|151398400|gb|EV268271.1|EV268271
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|13125697|gb|BG316267.1|BG316267
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|18690672|gb|BM519520.1|BM519520
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|17021885|gb|BM092919.1|BM092919
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|4396841|gb|AI495838.1|AI495838
EST:     GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: GTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtgaatttctaaagtaaaacaagatgctgttgtgttaaacatgagtatgccga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT