1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGTAGGGTTTTAGTTAAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcatcttcacctctccagcattctatttttctgcgttgagctatttgttttgtcttcttcattttcatttcgagattcgtaggaaaaacgatgt...
species | Glycine max |
transcript | GLYMA20G30810.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|42722893|gb|CK768792.1|CK768792
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: CGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|42722886|gb|CK768785.1|CK768785
genomic: CGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: CACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|209721631|gb|BW671746.1|BW671746
genomic: CACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|192322557|gb|FK014678.1|FK014678
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|209719747|gb|BW672122.1|BW672122
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|298167767|gb|HO013030.1|HO013030
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GGGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|209722195|gb|BW651237.1|BW651237
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|7691770|gb|AW759891.1|AW759891
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|14205438|gb|BG839116.1|BG839116
genomic: AGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: TCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGKCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|151401421|gb|EV271235.1|EV271235
genomic: TCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|213606710|gb|DB972566.1|DB972566
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|209724107|gb|BW659639.1|BW659639
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|18040885|gb|BM309179.1|BM309179
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: CAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|17021933|gb|BM092967.1|BM092967
genomic: CAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|15814458|gb|BI786733.1|BI786733
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: TCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|24205367|gb|BU964620.1|BU964620
genomic: TCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|42722708|gb|CK768607.1|CK768607
genomic: GGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: CGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|298164730|gb|HO014375.1|HO014375
genomic: CGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACCAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|209699599|gb|BW655705.1|BW655705
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|7926576|gb|AW832602.1|AW832602
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|12773466|gb|BG238393.1|BG238393
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: CGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|209729021|gb|BW655039.1|BW655039
genomic: CGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|7042767|gb|AW472661.1|AW472661
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|193402561|gb|FK369851.1|FK369851
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: TTTAGTTAAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGEST: gi|298191373|gb|HO038852.1|HO038852
genomic: TTTAGTTAAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGG
EST: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|209721346|gb|BW654540.1|BW654540
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|46492714|gb|CN472270.1|CN472270
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|151410170|gb|EV279978.1|EV279978
genomic: GGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|298178912|gb|HO024647.1|HO024647
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|213620200|gb|DB965450.1|DB965450
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCTCGGGTCEST: gi|213608082|gb|DB963026.1|DB963026
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|23727790|gb|BU761931.1|BU761931
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|209708350|gb|BW683940.1|BW683940
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|151398400|gb|EV268271.1|EV268271
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|13125697|gb|BG316267.1|BG316267
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: CGGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|17021885|gb|BM092919.1|BM092919
genomic: CGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: GGGACTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCEST: gi|4396841|gb|AI495838.1|AI495838
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: CTTTCACTAGCCGCAGCAGCCTCAG GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: CTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTAGGGTTTTAGTTAAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcatcttcacctctccagcattctatttttctgcgttgagctatttgttttgtcttcttcattttcatttcgagattcgtaggaaaaacgatgt
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