Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatagtagtcacaatattaacgacgatttgtttcctcatttttgtggtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG

Basic information

species Glycine max
transcript GLYMA20G30810.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 3'ss of exon 1
-----------------------------------------------------------------------------gatagtagtc-acaatattaacgacgatttgttt-cctcattt-ttgtggtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                                             |      | |  |    | | ||  |  |  ||| || | |||  | | ||  |  || |           |   |  ||      | || | | |     |||||||| |  | |||||| |||||||||||||||||||| |||||||| || || || || ||||| ||||||||  |  | || ||| |        
gtaaccatctcatccttcgcctcccctcgattcgctgctcgcctgcggcggcggcgcggctaggccatttcgttgccggcgtcggcctgcgggttcaccggtgggtgctttgccgcgtttgcttttgtcgtggatctgatggagtttgcgttttctcgcgggattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAGGCACGGATCCCTCGGCTTCCTCCCGAGGAAGCGCTCCTCCCGCCACCGC-------

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os12g07010.1 (Oryza sativa), 3'ss of exon 1
gatagtagtcacaatattaacgacgatttgtttcctcatttttgtggtgttaaatttatcacct-gccactagtcttcattacttat-----ttttgtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
  | |  |   |  || |     || | ||  |    |||   ||| | |||     ||   || |      |   ||||  ||| |     ||| ||||  |    ||||| |  | |||||| |||||||||||||||||||| ||||| || || || || || ||||| ||||||||  |  | || ||| | || || |
--tcgctggtgctgtagtttgatcgctgtggcttgcgattg--gtgattttacgggcattttcttggttgcggatctcatggcttgtgtgggtttcgtttgcagGTAAGGAGGAGGAAGATGTCGCACAGGAAGTTCGAGCACCCGAGGCATGGATCCCTCGGCTTCCTCCCGAGGAAGCGCTCCTCCCGCCACCGCGGCAAGG

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G324314_T03 (Zea mays), 3'ss of exon 1
---------------------------------------gatagtagtcacaat-attaacgacgatttgtttcctcatttttgtggtgttaaatttatca--cctgccactagtcttcattacttatttttgtttt-------taaagGAGGAGAATA-AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                          | | | |    |      || ||   | ||           |  | ||      | |    |  ||  ||  |||      ||| || |  | |        ||| | ||  ||    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| | ||     
gtaacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccggcggcggccttttcttcgccgcgcggcgagtcgcccatgttgagctcgcggctgatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGG-----

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM5G801409_T03 (Zea mays), 3'ss of exon 1
------------------------------------------------gatagtagt-cacaatattaacgacgatttgtttcctcatttttgtg------gtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATA----AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                  | |   | | |        || |  ||| ||  |  |     | |       |||| |  |  |  |    |    |   |  ||      |  ||    ||| | ||  ||  |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| |        
gtgaatgtaacgaatccgccgcgggcgtcatctcctcttcccacctcgactcgccttgctcgccggcggcggccttttcttcgccgagcggcgagccgcccatgttgagctcgtggctgatctgatgggcttgttgtgatctcctgcagATAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCG--------

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G132968_T01 (Zea mays), 3'ss of exon 1
------------------------------------------------gatagtagt-cacaatattaacgacgattt-gtttcctcatttttg-----tggtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATA----AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                  | |   | | |    |   || | |||| ||  || |               |||| |  |     |    |    |   |  ||      |  ||    ||| | ||  ||  |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | || ||| |        
gtgaatataaggaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcgtcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCG--------

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G324314_T04 (Zea mays), 3'ss of exon 1
---------------------------------------------gatagtagtcacaat-attaacgacgatttgtttcctcatttttgtggtgttaaatttatc--acctgccactagtcttcattacttatttttgtttt-------taaagGAGGAGAATA-AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                | | | |    |      || ||   | ||           |  | ||      | |    |  ||  ||  |||      ||| || |  | |        ||| | ||  ||    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| | ||     
gtggatgtaacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccggcggcggccttttcttcgccgcgcggcgagtcgcccatgttgagctcgcggctgatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGG-----

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G109677_T04 (Zea mays), 3'ss of exon 3
------------------------------------------------gatagtagt-cacaatattaacgacgattt-gtttcctcatttttg-----tggtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATA----AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                  | |   | | |    |   || | |||| ||  || |               |||| |  |     |    |    |   |  ||      |  ||    ||| | ||  ||  |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | |||||| |        
gtgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCG--------

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G135727_T04 (Zea mays), 3'ss of exon 1
-------------------------------------------------------gatagtagtcacaatattaacgacgattt-gtttcctcatttttg-----tggtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATA----AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                            | ||| |    |   || | |||| ||  || |               |||| |  |     |    |    |   |  ||      |  ||    ||| | ||  ||  |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | || ||| | || |   
gtgaatgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttggtcgc--cgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcaggtaagGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCGCGGCA---

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G135727_T01 (Zea mays), 3'ss of exon 1
-------------------------------------------------------gatagtagtcacaatattaacgacgattt-gtttcctcatt-----tttgtggtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATA----AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                            | ||| |    |   || | |||| ||  || |               |||| |  |     |    |    |   |  ||      |  ||    ||| | ||  ||  |    |||||||| ||| | |||||||||||||| |||||||| || || || || || |||||||||||  |  | || ||| |        
gtgaatgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttggtcgc--cgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCG--------

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 1
---gatagtagtcacaatattaacgacgatttgtttcctcatttttgtggtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
   |  |  |  |    | |||| |         |     | ||||    ||| ||  | | ||  ||     ||  || ||   || ||| |     |   | ||||| | ||| ||||| ||| ||||||| ||||| || ||||| || || || |||||| | || |||||||| ||||||||||| ||||||||||
aatggaaaaatgctaggtgttaaagttatgaaaatgtaatagttttcca-tgtaaatatgaacatttg-----aggattaatattttttttattcccatggtgaagGAGGAGAAGAATGTCGCACCGGAAGTTTGAGCATCCCAGGCATGGTTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316082|gb|FK008893.1|FK008893
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|42722893|gb|CK768792.1|CK768792
EST:     CGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: CGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|42722886|gb|CK768785.1|CK768785
EST:     CACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: CACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|209721631|gb|BW671746.1|BW671746
EST:     GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|192322557|gb|FK014678.1|FK014678
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|209719747|gb|BW672122.1|BW672122
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|298167767|gb|HO013030.1|HO013030
EST:     GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GGGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|209722195|gb|BW651237.1|BW651237
EST:     GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|7691770|gb|AW759891.1|AW759891
EST:     AGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|14205438|gb|BG839116.1|BG839116
EST:     TCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGKCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: TCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|151401421|gb|EV271235.1|EV271235
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|213606710|gb|DB972566.1|DB972566
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|209724107|gb|BW659639.1|BW659639
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|18040885|gb|BM309179.1|BM309179
EST:     CAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: CAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|17021933|gb|BM092967.1|BM092967
EST:     GGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|15814458|gb|BI786733.1|BI786733
EST:     TCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: TCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|24205367|gb|BU964620.1|BU964620
EST:     GGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|42722708|gb|CK768607.1|CK768607
EST:     CGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: CGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|298164730|gb|HO014375.1|HO014375
EST:     AAGTGCCTTCATTCGGGACTTTCACCAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|209699599|gb|BW655705.1|BW655705
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|7926576|gb|AW832602.1|AW832602
EST:     GGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|12773466|gb|BG238393.1|BG238393
EST:     CGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: CGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|209729021|gb|BW655039.1|BW655039
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|7042767|gb|AW472661.1|AW472661
EST:     GGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|193402561|gb|FK369851.1|FK369851
EST:     TTTAGTTAAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGG
genomic: TTTAGTTAAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGG
EST: gi|298191373|gb|HO038852.1|HO038852
EST:     GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|209721346|gb|BW654540.1|BW654540
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|46492714|gb|CN472270.1|CN472270
EST:     GGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|151410170|gb|EV279978.1|EV279978
EST:     GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|298178912|gb|HO024647.1|HO024647
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|213620200|gb|DB965450.1|DB965450
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCTCGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|213608082|gb|DB963026.1|DB963026
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|23727790|gb|BU761931.1|BU761931
EST:     GGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|209708350|gb|BW683940.1|BW683940
EST:     GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|151398400|gb|EV268271.1|EV268271
EST:     AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: AAGTGCCTTCATTCGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|13125697|gb|BG316267.1|BG316267
EST:     CGGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: CGGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|17021885|gb|BM092919.1|BM092919
EST:     GGGACTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: GGGACTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
EST: gi|4396841|gb|AI495838.1|AI495838
EST:     CTTTCACTAGCCGCAGCAGCCTCAG                         GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC
genomic: CTTTCACTAGCCGCAGCAGCCTCAGgttctctcat ... gtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                    cttatttttgttttt  CT-rich tract
                           tcttcattacttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatagtagtcacaatattaacgacgatttgtttcctcatttttgtggtgttaaatttatcacctgccactagtcttcattacttatttttgtttttaaagGAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - tgtttcc
- - - - - - - - - - - - - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcatt