1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGAAGCCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatttaaactcaatgactctgacttttttttaatcattgtgttctagttttactgttggtactgaaatgtgattttttttgtactgtgtag
species | Glycine max |
transcript | GLYMA20G30430.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTCAAG AACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATEST: gi|10234302|gb|BE803190.1|BE803190
genomic: CCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatt ... tactgtgtagAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAAT
EST: CCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTCAAG AACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACCEST: gi|193513187|gb|FK469643.1|FK469643
genomic: CCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatt ... tactgtgtagAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACC
EST: AAATGCCACCAAATATTGGTCAAGTATTCAAG AACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACCEST: gi|192328427|gb|FK020715.1|FK020715
genomic: AAATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatt ... tactgtgtagAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACC
EST: CCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTCAAG AACCACCTGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACC
genomic: CCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatt ... tactgtgtagAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGAAGCCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatttaaactcaatgactctgacttttttttaatcattgtgttctagttttactgttggtactgaaatgtgattttttttgtactgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG