1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcatattatgttatgtcctaaacacattcacgtgactaatagtccctttttatttagttttagttttttttaatgatcatttttgttgtttccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCACGCAACCCATATGGAGGTTCCAATCCACTCACAATATCCAGGTCCGAA
species | Glycine max |
transcript | GLYMA20G30430.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGEST: gi|12773082|gb|BG238009.1|BG238009
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAG
EST: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCEST: gi|8402803|gb|BE058437.1|BE058437
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
EST: ACTTTCACAAGGGCCTTGGATTTGCTGCAG AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCEST: gi|207819765|gb|GD790469.1|GD790469
genomic: ACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
EST: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGEST: gi|207774084|gb|GD745558.1|GD745558
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAG
EST: ATTTGCTGCAG AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCEST: gi|192328427|gb|FK020715.1|FK020715
genomic: ATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
EST: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG AAGCAAGGAATGGTGAAATCACGAGAAGAAGTAGCACTAGTACAAAGTGGC
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
ctttttatttagttttagttttttttaatgatcatttttgttgtttccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCACGCAACCCATATGGAGGTTCCAATCCACTCACAATATCCAGGTCCGAA
ttttaat putative branch site (score: 3)
tttttgttgtttcc putative PPT
tatttagttttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatattatgttatgtcctaaacacattcacgtgactaatagtccctttttatttagttttagttttttttaatgatcatttttgttgtttccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCACGCAACCCATATGGAGGTTCCAATCCACTCACAATATCCAGGTCCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - tgttatg
- - - - - - - - - - aacacat
- - - - - - - - - - - - - - - -gtgacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt