Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGgtgataattaagttctttcttcaagttattgccttttaagattactttgttcgtatcatgtttctttggtcacagtttagttttcatgtcagctgataattcatttttctctcttttcag

Basic information

species Glycine max
transcript GLYMA20G30430.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g47080.1 (Oryza sativa), 5'ss of exon 2
TCACGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGgtgataattaagttctttcttcaagttattgccttttaagat-tactttgttcgtatcatgtttctttggtcacagtttagttttcatgtcagctgataattcatttttctctcttttcag
 || ||||||||||| || || |||||| ||||||| || || || ||||||||||||||| | ||||| ||||| ||||| ||||||||||| || ||||| |  ||||     ||||||  |||| |||   | |||  | |     ||||  |  |    || |  |   | | |   | ||  ||| ||      |   | |               
ACATGGAGACCATGCATCACACCAGAAAGTTATTGACTTAGTAAAGGAATATAATGCTCAAACAAAGGATAACGTGATTGCTATTATGCTTGACACGAAGgtcagtatta-----tttctttgagtttttgtactctaatgtatgggcggttcacagtaatcatcctaagaacctgct--atatttgtgttagtcttacacagagta--------------

upper sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 2
TCACGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGgtgataattaagttctttcttcaagttattgccttttaagattactttgttcgtatcatgtttctttggtcacagtttagttttcatgtcagctgataattcatttttctctcttttcag
||| ||||| |||||||| ||| ||||  |||||||||||||||||||||| ||||| ||| | || ||||||   ||||| || |||||||| ||||||||  |  ||  |||   | || |  |  || |  || |   |  || ||| | | |   |  | |   |      || | | |||||                                 
TCATGGAGATCATGCTTCACATAAGAAGGTTATTGATTTGGTTAAAGAATACAATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAGgtt-tgtttttgtttcctatttatctatttac--ttgagagtctctatgtccatgtatcgcctttgacgattagtttcattgttcatag-------------------------------

upper sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
TCACGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGgtgataattaagttctttcttcaagttattgccttttaagattactttgttcgtat---catgtttctttggtcacagtttagttttcatg-tcagctgataa--ttcatttttc---tctcttttcag----------------------------------------
||| ||||| ||||| |||||||||||  ||||||||||||| ||||| |||||||| |||||||| || || || |||||||| ||||||||||||||||  |   ||    |  |||||     || |  | ||| |  || ||   |||   |    |  ||     | | ||    | |||   ||| |||| | |||   |||||||      || ||| | |                                         
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193490534|gb|FK457703.1|FK457703
EST:     ATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAG                         GGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACT
genomic: ATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGgtgataatta ... ctcttttcagGGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACT
EST: gi|193695735|gb|FK640493.1|FK640493
EST:     ATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAG                         GGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACT
genomic: ATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGgtgataatta ... ctcttttcagGGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACT