Sequence
atgc intronic sequence ATGC exonic sequenceTTTACCATCCGGAGGGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATGgtatggcaaccaactgattggtaaaaatgtttgaaatataaacaatttgttatgctcgtgggttgataagccaccaaacatgggactaatttattctttt...
Basic information
species | Glycine max |
transcript | GLYMA20G30430.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G152686_T01 (Zea mays), 5'ss of exon 3
TTTACCATCCGGAGGGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATGgtatggcaaccaactgattggtaaaaatgtttgaaatataaacaatttgttatgctcgtgggttgataagccaccaaacatgggactaatttattctttt-
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TTTACAATCAAAAGGGGAGTTGGGACTGATACGTGTGTTAGCGTTAACTATGACGACTTTGTTAATGATGTTGAAGTGGGCGACATGCTCCTTGTAGATGgtatgctgatatttacattccttttc-tgttagaaaataagactacataaccccctgaactattaatatttgggtctactttaacccagaacctacataac
upper sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTACCATCCGGAGGGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATGgtatg-gcaaccaactgattggtaaaaatgtttgaaatataaacaatttgttatgctcgtgggttgataagccaccaaacatgggactaatttattctttt
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TTTACAATTGAGAGAGGAGTCAGCACACCAAGTTGTGTCAGTGTTAACTATGATGATTTCGTTAATGACGTGGAAGCGGGTGACATGCTTCTTGTTGATGgtatgtacatcttattatttggtgtacaagggttttacatctgctttagtcttttccaatatattgatggcgcttttactatgttgtag------------
upper sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 3
TTTACCATCCGGAGGGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATGgtatggcaaccaactgattggtaaaaatgtttgaaatataaacaatttgttatgctcgtgggttgataagccaccaaacatgggactaatttattctttt-------
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TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatga-aacca--tgttttttc----tgtcatacaaataggttttgtagtaacctctttcctttactttccatcagtttgttcacccacttatcctcaattaacttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208217355|gb|GE010697.1|GE010697EST: TGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATG GTGGTATGATGTCTTTGGTGGTTAAGTCTAAGACAGAGGATTCTGTGAAAT
genomic: TGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATGgtatggcaac ... tatgatgtagGTGGTATGATGTCTTTGGTGGTTAAGTCTAAGACAGAGGATTCTGTGAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTACCATCCGGAGGGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATGgtatggcaaccaactgattggtaaaaatgtttgaaatataaacaatttgttatgctcgtgggttgataagccaccaaacatgggactaatttattctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccaa