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...tcaatagatggtttagtgcatcttaatgacttggaagactaatctaaagcaagagcattcatgggaagtgaaaataataattacatttattataatgcagGTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGAAGCCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTC
species | Glycine max |
transcript | GLYMA20G30430.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAA GTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGAEST: gi|10234302|gb|BE803190.1|BE803190
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAAgtaagtaata ... tataatgcagGTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGA
EST: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAA GTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGAEST: gi|26048715|gb|CA785168.1|CA785168
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAAgtaagtaata ... tataatgcagGTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGA
EST: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAA GTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGAEST: gi|192328427|gb|FK020715.1|FK020715
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAAgtaagtaata ... tataatgcagGTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGA
EST: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAA GTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGA
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAAgtaagtaata ... tataatgcagGTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGA
aaagcaagagcattcatgggaagtgaaaataataattacatttattataatgcagGTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGAAGCCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTC
atctaaa putative branch site (score: 3)
aagtgaaaataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatagatggtttagtgcatcttaatgacttggaagactaatctaaagcaagagcattcatgggaagtgaaaataataattacatttattataatgcagGTTCCCACTAAAAGCCGTGAAAGTAATGCACACCGTAGCATTACGGACAGAAGCCACTATACCTGGTGGTCAAATGCCACCAAATATTGGTCAAGTATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - ttagtgc
- - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - -aaagcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa