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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACAGAGGTTGGCTTTGTATCAAGGAGTCTGTCCTATTTACATGGAATTCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttggaggatatcttcagtattgaaatgtcacctatagaagcatataaccaggttcagagtacttataacaaaattaaagttgtttgcatggtt...

Basic information

species Glycine max
transcript GLYMA20G30430.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207801674|gb|GD772946.1|GD772946
EST:     TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG                         AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAG
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAG
EST: gi|12773082|gb|BG238009.1|BG238009
EST:     TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG                         AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
EST: gi|8402803|gb|BE058437.1|BE058437
EST:     ACTTTCACAAGGGCCTTGGATTTGCTGCAG                         AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
genomic: ACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
EST: gi|207819765|gb|GD790469.1|GD790469
EST:     TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG                         AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAG
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAG
EST: gi|207774084|gb|GD745558.1|GD745558
EST:     ATTTGCTGCAG                         AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
genomic: ATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
EST: gi|192328427|gb|FK020715.1|FK020715
EST:     TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG                         AAGCAAGGAATGGTGAAATCACGAGAAGAAGTAGCACTAGTACAAAGTGGC
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... tccattacagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAACAGAGGTTGGCTTTGTATCAAGGAGTCTGTCCTATTTACATGGAATTCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttggaggatatcttcagtattgaaatgtcacctatagaagcatataaccaggttcagagtacttataacaaaattaaagttgtttgcatggtt

- - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa