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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggcttctcctttacagtggtgtaatttacatattatctggttaaatagtcagttaatagtactctttttttgcaccatagtgcaacattttag...

Basic information

species Glycine max
transcript GLYMA20G30080.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30080.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g39670.1 (Oryza sativa), 5'ss of exon 4
TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgc-tggcttctcctttaca--gtggtgtaatttacatat-tatctggttaaatagtcagttaatagtactctttttttgcaccatagtgcaacattttag
 ||||||  |    | ||||||||||||||||||||||| |||||||| ||||| ||||||||| | ||  |  | |||||| || | |||  ||  ||| |   ||  |  | ||| | || ||| |  ||   |     | |  || |     || |||  |      |       ||   
GTACAACTCCATTGGAGCATATGGGCAGTCAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattgctcttctcttagatcatgtcgccagttatagatatattttttttggtgcaacgctg-tatttggagttatttcaattgagatatgtttatt---

upper sequence: GLYMA20G30080.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G009940_T02 (Zea mays), 5'ss of exon 5
TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtg-ctggcttctcctttacagtggtgtaatttacatattatctggttaaatagtcagttaatagtactctttttttgcaccatagtgcaacattttag----
 || |  | |    ||||||||||||| ||||||||||| ||||| || ||||| ||||||||| | || ||  |  |||| || || |    ||    |||    |||  | |  |  ||||   | |  ||    |||||  | | |  ||| | ||||    |        | |       
GTATAGTAGCATTGGTGCATATGGGCAATCAAAGCTTGCAAACATATTGCATGCTAATGAACTTGCCAGGCGATTTGAGgtatgtcttgtccatctaacacatgcatgttttcttgaccttat---ggtgcatgtatagtta-caatgca-tttgtatgcattgcaactttttttctcgagcgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930059|gb|BU547198.1|BU547198
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|209715121|gb|BW677164.1|BW677164
EST:     CATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|31473948|gb|CD415976.1|CD415976
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|14516408|gb|BI095080.1|BI095080
EST:     CAGAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|19452661|gb|BM954071.1|BM954071
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|14206074|gb|BG839752.1|BG839752
EST:     AAAGCTTGCCAACATTTTAACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTTCTGCAAATTCTCTTCATCCAGGAACAATCAC
genomic: AAAGCTTGCCAACATTTT-ACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATA-TTTCTGCAAATTCTCTTCATCCAGGAACAATCAC
EST: gi|31471558|gb|CD413586.1|CD413586
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTTATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|151394515|gb|EV264386.1|EV264386
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|14205703|gb|BG839381.1|BG839381
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|192319094|gb|FK010630.1|FK010630
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC