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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCGATGAAGTCTGTCAGGAAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATgtaagaaaaggagatggcatgcatcacattatcaactttattttcactatttattttatcactttgtttttagtaaagttgttagttactagttccctctcattatgcgtgcctatgttccaattgagccctcttaatcccaatcttcaaggaaacacaggagtaatattgctttctggtttgtttgttattataag

Basic information

species Glycine max
transcript GLYMA20G30080.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204724|gb|BI427492.1|BI427492
EST:     AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAAT                         AAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
genomic: AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATgtaagaaaag ... ttattataagAAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
EST: gi|151398063|gb|EV267941.1|EV267941
EST:     AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAAT                         AAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAGGACAAAAT
genomic: AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATgtaagaaaag ... ttattataagAAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
EST: gi|209715120|gb|BW677163.1|BW677163
EST:     AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAAT                         AAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
genomic: AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATgtaagaaaag ... ttattataagAAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
EST: gi|26269039|gb|CA820102.1|CA820102
EST:     AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAAT                         AAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
genomic: AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATgtaagaaaag ... ttattataagAAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
EST: gi|151394515|gb|EV264386.1|EV264386
EST:     AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAAT                         AAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
genomic: AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATgtaagaaaag ... ttattataagAAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
EST: gi|17964274|gb|BM271012.1|BM271012
EST:     AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAAT                         AAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
genomic: AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATgtaagaaaag ... ttattataagAAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
EST: gi|14205703|gb|BG839381.1|BG839381
EST:     AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAAT                         AAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
genomic: AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATgtaagaaaag ... ttattataagAAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAAT
EST: gi|5058402|gb|AI736934.1|AI736934
EST:     AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAAT                         AAACAATGCAGGAATTATGGCT
genomic: AAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATgtaagaaaag ... ttattataagAAACAATGCAGGAATTATGGCT