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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAAAGAAAGAAGGAAGAATTGTTAATGTTTCCTCTGAGGCTCACCGATTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgtaacctaaattcaaattatgacaagatattctggcaatctttttttttatctttgtaacttttaatgaaagaggaacttattgagagaggaa...

Basic information

species Glycine max
transcript GLYMA20G30080.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930059|gb|BU547198.1|BU547198
EST:     CTGTTTTGACAAAATTAATGATGAATCAAG                         TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
genomic: CTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
EST: gi|151398063|gb|EV267941.1|EV267941
EST:     TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAG                         TTACGACAACTGGCGTGCATATGGGCAGTCAAAGCTT
genomic: TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTT
EST: gi|31473948|gb|CD415976.1|CD415976
EST:     GAATCTGTTTTGACAAAATTAATGATGAATCAAG                         TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
genomic: GAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
EST: gi|19452661|gb|BM954071.1|BM954071
EST:     TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAG                         TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
genomic: TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
EST: gi|14206074|gb|BG839752.1|BG839752
EST:     CATATTCTGAAGGAATCTGTTTTGACAAAATTAATGGTGAATCAAG                         TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTAAC
genomic: CATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTT-AC
EST: gi|209715120|gb|BW677163.1|BW677163
EST:     TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAG                         TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
genomic: TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
EST: gi|31471558|gb|CD413586.1|CD413586
EST:     ATGATGAATCAAG                         TTACAACAACTGGCGTGCATATGGCCAGTCAAAGCTTGCCAACATTTTACA
genomic: ATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
EST: gi|26269039|gb|CA820102.1|CA820102
EST:     TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAG                         TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
genomic: TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
EST: gi|151394515|gb|EV264386.1|EV264386
EST:     TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAG                         TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
genomic: TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
EST: gi|14205703|gb|BG839381.1|BG839381
EST:     TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAG                         TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
genomic: TTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
EST: gi|192319094|gb|FK010630.1|FK010630
EST:     TTTGACAAAATTAATGATGAATCAAG                         TTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA
genomic: TTTGACAAAATTAATGATGAATCAAGgtaatatgta ... ttgatttcagTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCAAAGAAAGAAGGAAGAATTGTTAATGTTTCCTCTGAGGCTCACCGATTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGgtaatatgtaacctaaattcaaattatgacaagatattctggcaatctttttttttatctttgtaacttttaatgaaagaggaacttattgagagaggaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA