Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgacttaatctttgctagttattctcatccattaaatagtcattaatcaattgtgcaatgaccaatactgatagttggtgctcctgaagttactgtttt...

Basic information

species Glycine max
transcript GLYMA20G29230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29230.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 5'ss of exon 7
GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgt--gacttaatctttgctagttattctcatccattaaatagtcattaatcaattgtgcaatgaccaatactgatagttggtgctcctgaagttactgtttt--
|| |||||||| || || |||||||||||||||||||| || || || ||  ||||||||||||| |||||  | | |||  |    |   ||||||| |  |||    ||| ||| || |  |    |||   |||| ||  |   |   |  |    |  ||     |   
GCCAATGGTGGCTTCATCATGAGTGCAAGCCATAATCCAGGTGGGCCAGATAATGATTGGGGTATCAAGgtatgccataacttaaattgtatattctcttgtattg--cagtaattgattagattaataata--caattctatttagtttcgtcctgacaaatatgaaatgaa

upper sequence: GLYMA20G29230.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 7
GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgacttaatcttt-----gctagttattct-catccattaaatagtcattaatcaattgtgcaatgaccaatactgatagttggtgctcctgaagttactgtttt
|| ||||| || ||||| |||||||||||||||||||| || ||||| ||  |||| |||||||||||||||   ||  |  |     | |   |||| |   | | ||  | |||  |  ||  ||||           ||| ||| |  |||      |||     | ||   
GCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGACAATGACTGGGGTATTAAGgtgtgctaggcaataaaaagatgtgtattgtgttttccttctacagtggt-gatttattgaatccaagtggataatgaca--tggaatgtttgagcgagcagt---

upper sequence: GLYMA20G29230.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 7
GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgacttaatctttgctagttatt-ctcatccattaaa-tagtcattaatcaattgtgcaatgaccaa---tactgatagttggtgctcctgaagttactgtttt
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||  ||    |  |  |   || || |    ||    |||  | |     ||  |  ||  | |||   ||||  |  ||   | || | | ||    |    
GCAAATGGAGGATTCATTATGAGTGCAAGCCATAATCCTGGTGGACCTGAATATGACTGGGGTATCAAGgtgaagtatcagtaacgtgcccttacttactttttgtcctaggaactgtagtatctttgaaaaatcaagcttacttttgattatggttcatcatgt-gtgg----

upper sequence: GLYMA20G29230.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 7
GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgact--taatctttgctagttat-tctcatccattaaatagtcattaatcaattgtgcaatgaccaat--actgatagttggtgctcctgaagttactgtttt
|| ||||| || ||||| ||||||||||||||||||||||| || ||||||||||||||||| || ||||||| |  ||||  |   || |||| |    ||| ||  ||| | |||  | || |   ||        |    | | | ||    || |   ||||||||    
GCCAATGGAGGTTTTATAATGAGTGCAAGCCATAATCCTGGTGGGCCTGAATATGATTGGGGCATCAAGgtgaatgttaatgctca-tatttatatagtgtcctttgcataattatt--ttaaattctcagcagttttttggtttacaatta-cactgcaatagttactgaac-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000098|gb|BI320912.1|BI320912
EST:     TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAG                         TTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATT
genomic: TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgacttaat ... ttgactccagTTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATT
EST: gi|19348237|gb|BM892769.1|BM892769
EST:     TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAG                         TTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATT
genomic: TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgacttaat ... ttgactccagTTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATT
EST: gi|7796595|gb|AW781992.1|AW781992
EST:     TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAG                         TTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATT
genomic: TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgacttaat ... ttgactccagTTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATT
EST: gi|17021716|gb|BM092750.1|BM092750
EST:     TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAG                         TTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATT
genomic: TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgacttaat ... ttgactccagTTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATT