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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCTGCAGGGGCAACTGTTAGAGTGTACATTGAACAGTTTGAACCAGATGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGgttattttcattttaccaatataaaatatagtaacatttgaatgacttattttctatgcgactgattgctcttattatcatgcag

Basic information

species Glycine max
transcript GLYMA20G29230.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29230.1 (Glycine max), 5'ss of exon 21
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 21
GGTTCTGCAGGGGCAACTGTTAGAGTGTACATTGAACAGTTTGAACCAGATGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGgtt-attttcattttaccaatataaaatatagtaacatttgaatgacttattttctatgcgactgattgctcttattatcatgcag---
|| || || || || || ||  || | ||||||||||| ||||| ||||| || || ||||||||||| ||||| ||||| ||  | ||||| ||||| ||||  || |   |||         | |  ||   |  |   | |   ||   ||   |   | |||||  ||| ||| ||||||     
GGCTCAGCTGGAGCTACAGTGCGAATATACATTGAACAATTTGAGCCAGACGTTTCAAAACATGATGTGGATGCACAAATAGCTCTTAAACCTTTAATCGgttcgttcttggttttgtttcgggagagttaaagatgtcccagt--tttgactttagt---aatgattcatctcattgtcatgctacag

upper sequence: GLYMA20G29230.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 21
GGTTCTGCAGGGGCAACTGTTAGAGTGTACATTGAACAGTTTGAACCAGATGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGgttattttcattttaccaatataaaatatagtaacatttgaatgacttattttctatgcgactgattgctcttattatcatgcag
||||||||||| |||||||||||| | || |||||||||||||| ||||||||||||||||||||  | ||||| |||   || || || ||||| |||||||| ||  || |       | || ||| | |||| |   |   |  ||||   ||      |  |||||| | || |       
GGTTCTGCAGGTGCAACTGTTAGAATTTATATTGAACAGTTTGAGCCAGATGTCTCTAAACATGAAATGGATGCCCAAGCAGCATTGAAGCCATTGATAGgttagttcaatgtcgtttccacaagataaactaac-tcgtatcaaggtattgattac----ttatttgctcatgttttag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930830|gb|BU547977.1|BU547977
EST:     TGTCTCTAAACATGATGTTGATGCTCAAATTTCCTTAAAACCATTAATAG                         ATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGC
genomic: TGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGgttattttca ... tatcatgcagATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGC
EST: gi|5753218|gb|AI960505.1|AI960505
EST:     TGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAG                         ATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGGAGAAG
genomic: TGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGgttattttca ... tatcatgcagATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGG-AGAAG