1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...aatgagataccttgattagttgatttccaacagctactttagggactggatacaaatctgtaagaagttactgatattggatgttaattatgtaatatagGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCTGATCCTAATCTAAC
species | Glycine max |
transcript | GLYMA20G29230.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTG GATTCAATTTCAAATGGAATCCCCTTTGGA-GATTTTEST: gi|19348237|gb|BM892769.1|BM892769
genomic: CTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTGgtatggtcct ... tgtaatatagGATTCAATTTCAAATGGAATCCC-TTTGGAAGATTTT
EST: CTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTG GATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCTEST: gi|14125575|gb|BG790013.1|BG790013
genomic: CTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTGgtatggtcct ... tgtaatatagGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCT
EST: CTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTG GATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCT
genomic: CTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTGgtatggtcct ... tgtaatatagGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCT
ctggatacaaatctgtaagaagttactgatattggatgttaattatgtaatatagGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCTGATCCTAATCTAAC
atgttaattatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgagataccttgattagttgatttccaacagctactttagggactggatacaaatctgtaagaagttactgatattggatgttaattatgtaatatagGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCTGATCCTAATCTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - -taccttg
- - - - - - - - - - - - -tccaaca
- - - - - - - - - - - - - - - - gctactt
- - - - - - - - - - - - - - - - - - - - - - - - gatacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgt