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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTGCTCGATCAATGCCAACAAGTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAGgcatgctttatttttcttacaatttctttcttcttaaattattaatataaatgaaataggcttcacatatttttagacagttctgaaataacaaaagatggacccgggattcag

Basic information

species Glycine max
transcript GLYMA20G29230.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29230.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os10g11140.1 (Oryza sativa), 5'ss of exon 15
GGTCTTGCTCGATCAATGCCAACAAGTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAGgcatgctttatttttcttacaatttctttcttcttaaattattaatataa-atgaaataggcttcacatatttttagacagttctgaaataacaaaagatggacccgggattcag
||||||||| ||||||||||||| ||||||||| | || ||||| ||||| |||||| |  | || |||||||||| |       ||||       | ||   | | | | | || ||   | || |   |||||||    |||   ||     ||  | |  |  |||| |     ||   | |     
GGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGATAAATTGAATGTTCCGTTCTTTGAGgtac------ttttgtcagtgaattgcatgtgcatgatttgtttgcaaaatagtcaataggc----catggcttctagaagaacagctaagacaatatggtcactttgcag----

upper sequence: GLYMA20G29230.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 15
GGTCTTGCTCGATCAATGCCAACAAGTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAGgcatgctttatttttcttacaatttctttctt--cttaaattattaatataaatgaaatag---gcttcacatatttttagacagttctgaaataacaaaagatggacccgggattcag---------------
||| | |||||||| |||||||| ||||||||| | || ||||||||||||||||||   || || ||||||||||         | | |  ||   | || |  ||  | |  |  | |    |   | |||| |   | || | ||   || | | | ||||    |||||||  |||  |     | | |                
GGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAGgtgaagcccttctgtactaatttgtcgtgattaacatggaaaactgtcttgcttaaaatggaaaggtttatatccattgacatacttctctcctaacaaactatgtccttaacaatgactattcttggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529538|gb|EH257672.1|EH257672
EST:     GTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAG                         GTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTG
genomic: GTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAGgcatgcttta ... cgggattcagGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTG
EST: gi|120529768|gb|EH257902.1|EH257902
EST:     GTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAG                         GTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTG
genomic: GTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAGgcatgcttta ... cgggattcagGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTG