Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattttcattttaccaatataaaatatagtaacatttgaatgacttattttctatgcgactgattgctcttattatcatgcagATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGCCTACAGTTATCACATAATGGACAATTCCACAACCACTTGATCAAGTTGT

Basic information

species Glycine max
transcript GLYMA20G29230.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29230.1 (Glycine max), 3'ss of exon 21
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 3'ss of exon 21
-gttattttcattttaccaatataaaatatagtaacatttgaatgacttattttctatgcgactgattgctcttattatcatgc---agATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGCCTACAGTTATCACATAATGGACAATTCCACAA---CCACTTGATCAAGTTGT
  |  || |   |||         | |  ||   |  |   | |   ||   ||   |   | |||||  ||| ||| ||||||   |||| | ||| | ||  | |||||||| || ||||||||||||||||||||||| || || || |||| | |   | |  ||||    ||  | ||| | |    
gttcgttcttggttttgtttcgggagagttaaagatgtcccagt--tttgactttagt---aatgattcatctcattgtcatgctacagATCTTGCATTGTCTGTATCAAAGCTGAAGGACTTCACAGGGAGGGAGAAGCCCACTGTCATTACATGAAGAGAAGTGTCACATGGTCCTTTCGATAAGGC---

upper sequence: GLYMA20G29230.1 (Glycine max), 3'ss of exon 21
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 21
gttattttcattttaccaatataaaatatagtaacatttgaatgacttattttctatgcgactgattgctcttattatcatgcagATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGCCTACAGTTATCACATAATGGACAATTCCA--CAACCACTTGATCAAGTTGT
|||| ||  || |       | || ||| | |||| |   |   |  ||||   ||      |  |||||| | || |     |||||||||  ||||  |||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| | ||| | |||  |||   | |  || | |   
gttagttcaatgtcgtttccacaagataaactaac-tcgtatcaaggtattgattac----ttatttgctcatgtttt-----agATTTGGCGTTATCTTTGTCGAAGCTCAAGGACTTCACAGGAAGGGAGAAACCTACAGTGATCACATAAGGCACATTCCCAGTCAATTTCATTGTCCAATG--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930830|gb|BU547977.1|BU547977
EST:     TGTCTCTAAACATGATGTTGATGCTCAAATTTCCTTAAAACCATTAATAG                         ATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGC
genomic: TGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGgttattttca ... tatcatgcagATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGC
EST: gi|5753218|gb|AI960505.1|AI960505
EST:     TGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAG                         ATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGGAGAAG
genomic: TGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGgttattttca ... tatcatgcagATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGG-AGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacatttgaatgacttattttctatgcgactgattgctcttattatcatgcagATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGCCTACAGTTATCACATAATGGACAATTCCACAACCACTTGATCAAGTTGT
                                      ctcttatt  CT-rich tract
                ttattttctat  TA-rich tract