1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCACATGAGGCAGAGTATTCACAACCCAAACATTGCTGTGAACCTGCAATCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGAgtatgtcattttgccacattaatgtcttcaaaagcatttttgagggctttaattttgttagctgatttaatttgcttattcaatcattgcag
species | Glycine max |
transcript | GLYMA20G02220.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGA GTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGAEST: gi|23064440|gb|BU579213.1|BU579213
genomic: TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGAgtatgtcatt ... atcattgcagGTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGA
EST: TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGA GTTCCGCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGATGAEST: gi|209727039|gb|BW675404.1|BW675404
genomic: TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGAgtatgtcatt ... atcattgcagGTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGA
EST: TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGA GTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGA
genomic: TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGAgtatgtcatt ... atcattgcagGTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACATGAGGCAGAGTATTCACAACCCAAACATTGCTGTGAACCTGCAATCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGAgtatgtcattttgccacattaatgtcttcaaaagcatttttgagggctttaattttgttagctgatttaatttgcttattcaatcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG