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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcattttgccacattaatgtcttcaaaagcatttttgagggctttaattttgttagctgatttaatttgcttattcaatcattgcagGTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGATAAGTTTGCTGAAAATGGCTCCAAAGCCTAATTTGCAATACTTAATAAA

Basic information

species Glycine max
transcript GLYMA20G02220.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760129|gb|AI965492.1|AI965492
EST:     TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGA                         GTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGA
genomic: TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGAgtatgtcatt ... atcattgcagGTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGA
EST: gi|23064440|gb|BU579213.1|BU579213
EST:     TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGA                         GTTCCGCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGATGA
genomic: TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGAgtatgtcatt ... atcattgcagGTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGA
EST: gi|209727039|gb|BW675404.1|BW675404
EST:     TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGA                         GTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGA
genomic: TCATCTGTTCGGGGAGGTTGCTTGTCTATGGCAAGAGCTTTTAGAGATGAgtatgtcatt ... atcattgcagGTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgagggctttaattttgttagctgatttaatttgcttattcaatcattgcagGTTCCTCAAAGCAAGTGGAGTTCATACATTCCTTGACATTACTCAAGTTGATAAGTTTGCTGAAAATGGCTCCAAAGCCTAATTTGCAATACTTAATAAA
                           atttaat  putative branch site (score: 4)
                           atttaatttgcttatt  TA-rich tract