1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaattggctttgtgaattgtttttcaaaaccttgctccatattttgaaaacattgtggttatcaaagattcaaaacataaaagagtttctttctatacagGAAGGGAGACTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTGAGTGAAGGGTGCCTTGTAGATACAAATGACACCCCAGCTCCCATTGATG
species | Glycine max |
transcript | GLYMA20G02220.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAAAGCCAAAGGAATCGAGGCTATTGAAATATTTAGAAATTACATTGAG GAAGGGAGACTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGTGTGEST: gi|151403473|gb|EV273283.1|EV273283
genomic: CTAAAGCCAAAGGAATCGAGGCTATTGAAATATTTAGAAATTACATTGAGgtatactttg ... ttctatacagGAAGGGAGACTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTG
EST: CTAAAGCCAAAGGAATCGAGGCTATTGAAATATTTAGAAATTACATTGAG GAAGGGAGACTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTGEST: gi|209727039|gb|BW675404.1|BW675404
genomic: CTAAAGCCAAAGGAATCGAGGCTATTGAAATATTTAGAAATTACATTGAGgtatactttg ... ttctatacagGAAGGGAGACTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTG
EST: CTAAAGCCAAAGGAATCGAGGCTATTGAAATATTTAGAAATTACATTGAG GAAGGGAGACTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTG
genomic: CTAAAGCCAAAGGAATCGAGGCTATTGAAATATTTAGAAATTACATTGAGgtatactttg ... ttctatacagGAAGGGAGACTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTG
gaaaacattgtggttatcaaagattcaaaacataaaagagtttctttctatacagGAAGGGAGACTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTGAGTGAAGGGTGCCTTGTAGATACAAATGACACCCCAGCTCCCATTGATG
tttctttctat CT-rich tract
attcaaaacataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattggctttgtgaattgtttttcaaaaccttgctccatattttgaaaacattgtggttatcaaagattcaaaacataaaagagtttctttctatacagGAAGGGAGACTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTGAGTGAAGGGTGCCTTGTAGATACAAATGACACCCCAGCTCCCATTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - -ggctttg
- - - - - - - - - - - - caaaacc
- - - - - - - - - - - - - - - - tgctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaca