1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggttaaagttaatattcatgaatgtttttgtttcattgttttgatttgccatgttgttattgataatgtttttgcctttttaatgaagGGGCTTACATGGTGGTGAAGATTATAATTGAAATGGTTAGGATGAAGCTTGCTGGATCAAATGAAGGGATTGGTAGTCTTATAGAAGATCTTGAAGAACC
species | Glycine max |
transcript | GLYMA20G02220.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAAACATCTGGTCATGGTGCTCTCAAAGAAAATCATTTCCTTGATGACG GGGCTTACATGGTGGTGAAGATTATAATTGAAATGGTTAGGATGAAGCTTGEST: gi|151403473|gb|EV273283.1|EV273283
genomic: GGAAACATCTGGTCATGGTGCTCTCAAAGAAAATCATTTCCTTGATGACGgttggttaaa ... tttaatgaagGGGCTTACATGGTGGTGAAGATTATAATTGAAATGGTTAGGATGAAGCTTG
EST: GGAAACATCTGGTCATGGTGCTCTCAAAGAAAATCATTTCCTTGATGACG GGGCTTACATGGTGGTGAAGATTATAATTGAAATGGTTAGGATGAAGCTTG
genomic: GGAAACATCTGGTCATGGTGCTCTCAAAGAAAATCATTTCCTTGATGACGgttggttaaa ... tttaatgaagGGGCTTACATGGTGGTGAAGATTATAATTGAAATGGTTAGGATGAAGCTTG
cattgttttgatttgccatgttgttattgataatgtttttgcctttttaatgaagGGGCTTACATGGTGGTGAAGATTATAATTGAAATGGTTAGGATGAAGCTTGCTGGATCAAATGAAGGGATTGGTAGTCTTATAGAAGATCTTGAAGAACC
ttttaat putative branch site (score: 3)
tgtttttgccttttt CT-rich tract
ttattgataatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttaaagttaatattcatgaatgtttttgtttcattgttttgatttgccatgttgttattgataatgtttttgcctttttaatgaagGGGCTTACATGGTGGTGAAGATTATAATTGAAATGGTTAGGATGAAGCTTGCTGGATCAAATGAAGGGATTGGTAGTCTTATAGAAGATCTTGAAGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC