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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggaatcaagttaaagaaaattcaagcagcgcttcaatagatccgattttacatttctttatgttttgctcatcaaaactgatttaattgtgacaaattcagGGCAAAAGTATCAAACGATGAGCATGCACAACATGGTTGGGTTCACATGAGGCAGAGTATTCACAACCCAAACATTGCTGTGAACCTGCAATCATCTGTT

Basic information

species Glycine max
transcript GLYMA20G02220.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064440|gb|BU579213.1|BU579213
EST:     CTTGTAGATACAAATGACACCCCAGCTCCCATTGATGCTCAAATGTACAG                         GGCAAAAGTATCAAACGATGAGCATGCACAACATGGTTGGGTTCACATGAG
genomic: CTTGTAGATACAAATGACACCCCAGCTCCCATTGATGCTCAAATGTACAGgtggaatcaa ... acaaattcagGGCAAAAGTATCAAACGATGAGCATGCACAACATGGTTGGGTTCACATGAG
EST: gi|151403473|gb|EV273283.1|EV273283
EST:     CTTGTAGATACAAATGACACCCCAGCTCCCATTGATGCTCAAATGTACAG                         GGCAAGAGTATCAAACGATGAGCATGCACAACATGGTTGGGTTCACA
genomic: CTTGTAGATACAAATGACACCCCAGCTCCCATTGATGCTCAAATGTACAGgtggaatcaa ... acaaattcagGGCAAAAGTATCAAACGATGAGCATGCACAACATGGTTGGGTTCACA
EST: gi|209727039|gb|BW675404.1|BW675404
EST:     CTTGTAGATACAAATGACACCCCAGCTCCCATTGATGCTCAAATGTACAG                         GGCAAAAGTATCAAACGATGAGCATGCACAACATGGTTGGGTTCACATGAG
genomic: CTTGTAGATACAAATGACACCCCAGCTCCCATTGATGCTCAAATGTACAGgtggaatcaa ... acaaattcagGGCAAAAGTATCAAACGATGAGCATGCACAACATGGTTGGGTTCACATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacatttctttatgttttgctcatcaaaactgatttaattgtgacaaattcagGGCAAAAGTATCAAACGATGAGCATGCACAACATGGTTGGGTTCACATGAGGCAGAGTATTCACAACCCAAACATTGCTGTGAACCTGCAATCATCTGTT
     atttctttatgtttt  TA-rich tract