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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttctaaacatgtacttgcattaattgtttatgtgtaatgatcattaatggagatgaatatgattctattgcatgttttcttaggctagcttcc...

Basic information

species Glycine max
transcript GLYMA19G36680.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193550312|gb|FK509197.1|FK509197
EST:     GTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTT-ATGTCTAATGAATTGCCAAGGT
genomic: GTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTGCCAAGGT
EST: gi|151394863|gb|EV264734.1|EV264734
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|209727236|gb|BW655247.1|BW655247
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|193655938|gb|FK606624.1|FK606624
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAGTAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|151397327|gb|EV267200.1|EV267200
EST:     TGAATAGTTCAGGATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|192300429|gb|FG991471.1|FG991471
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|192332843|gb|FK026844.1|FK026844
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|31470516|gb|CD412544.1|CD412544
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|8283491|gb|BE021050.1|BE021050
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|192325592|gb|FK019448.1|FK019448
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|298191793|gb|HO035875.1|HO035875
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|192332844|gb|FK026845.1|FK026845
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|31306126|gb|CD391329.1|CD391329
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTAATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|151408235|gb|EV278043.1|EV278043
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTCG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATT-G
EST: gi|298166913|gb|HO010352.1|HO010352
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAA
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAA
EST: gi|308098557|gb|HO760298.1|HO760298
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|192305270|gb|FG993994.1|FG993994
EST:     TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG
EST: gi|298180406|gb|HO021959.1|HO021959
EST:     TGAATAGTTCAGAATTTGGTCTAGACGTTGAAGATTACTTAATAG                         GTGTCTGTTTTATGTCTAATGAATTG
genomic: TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttc ... taccatgcagGTGTCTGTTTTATGTCTAATGAATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGgtgagtcttctaaacatgtacttgcattaattgtttatgtgtaatgatcattaatggagatgaatatgattctattgcatgttttcttaggctagcttcc

- - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - TGAAGA