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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCGCGAACGAATTCGAAGCGTCGTTTCGGAGATTGAGTCCTCCACTAGGCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactacccagcacactatgctcctctttcttcacttaaccctaaccgcactagtttccttttcttatgctctcttgggccgattctgggtttctctgtc...

Basic information

species Glycine max
transcript GLYMA19G36680.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36680.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0040g01630.t01 (Vitis vinifera), 5'ss of exon 1
TTGCGCGAACGAATTCGAAGCGTCGTTTCGGAGATTGAGTCCTCCACTAGGCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactacccagcacactatgctcctctttcttcacttaaccctaaccgcactagtttccttttcttatgctctcttgggccgattctgggtttc-tctgtc-
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CTACGCGAACGGGTGCGAGCCATTGCGATGGAGATCGAGTCCGCCACTAGGCTCATGCATGCGAACCTTCTTCTCGTTCACCAGTCTCGCTCTGTTCCAGgtactgcaaattgtacttcga--ctgtgtttgaatttcgtcttgtttctgaaaattttgagaaggaaggagggagagtgccgaggaatggttaaatgtattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7232984|gb|AW568335.1|AW568335
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|4396621|gb|AI495618.1|AI495618
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|151394863|gb|EV264734.1|EV264734
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298177419|gb|HO023552.1|HO023552
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|209727236|gb|BW655247.1|BW655247
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298171306|gb|HO016338.1|HO016338
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTACA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|151397327|gb|EV267200.1|EV267200
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|192300429|gb|FG991471.1|FG991471
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|192332843|gb|FK026844.1|FK026844
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|192325592|gb|FK019448.1|FK019448
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298191793|gb|HO035875.1|HO035875
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|192332844|gb|FK026845.1|FK026845
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|151408235|gb|EV278043.1|EV278043
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298166913|gb|HO010352.1|HO010352
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|6915285|gb|AW396815.1|AW396815
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298180406|gb|HO021959.1|HO021959
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|4313839|gb|AI460958.1|AI460958
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA