Sequence
atgc intronic sequence ATGC exonic sequenceATATGGCTGAGCGCCAGTGGGCAGATGCAGCTACTGATTTCTTTGATGCTTTCAAGAATTATGATGAAGCTGGTAGTCAGAGACGTATCCAATGTTTGAAgtaggtgaagcagcattctttttactatctgtatatagcaataactttatatttcacttcagcatataaaacaatgtaattaaccacaataactattttg...
Basic information
species | Glycine max |
transcript | GLYMA19G17660.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G17660.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g17180.1 (Oryza sativa), 5'ss of exon 7
ATATGGCTGAGCGCCAGTGGGCAGATGCAGCTACTGATTTCTTTGATGCTTTCAAGAATTATGATGAAGCTGGTAGTCAGAGACGTATCCAATGTTTGAAgtaggtgaagca---gcattctttttac----tatctgtatatagcaataactttata--tttcacttcagcatataaaacaatgta-attaaccacaataactattttg
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ACATGGCTGAGAGGCAATGGGCAGATGCTGCAACTGATTTCTTTGAAGCATTCAAAAACTATGATGAAGCTGGCAATCCGCGGAGAATTCAATGCCTGAAgtaatcaaatcatctgcatttcttttccattttaatttcgtatattgataaatttagaacttcctcatccttttttattgtactgcatattag-----------------
upper sequence: GLYMA19G17660.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G132804_T01 (Zea mays), 5'ss of exon 7
ATATGGCTGAGCGCCAGTGGGCAGATGCAGCTACTGATTTCTTTGATGCTTTCAAGAATTATGATGAAGCTGGTAGTCAGAGACGTATCCAATGTTTGAAgtaggtgaagcagcattctttttacta--tctgtatatagcaataactttatatttcacttcagcatataaaacaatgtaattaaccacaataactattttg------------
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ATATGGCTGAGAGGCAGTGGGATGAGGCTGCCACTGATTTCTTTGAAGCTTTCAAGAACTATGATGAAGCAGGCAATCCGCGGAGAATTCAATGCCTAAAgtacttatacttatttaaacttcaacagttcttcacttcttcctgatcttagttcataggtacataaattctagaacactgtgatacatatcatttttttttgctgtgcattag
upper sequence: GLYMA19G17660.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G079196_T01 (Zea mays), 5'ss of exon 7
ATATGGCTGAGCGCCAGTGGGCAGATGCAGCTACTGATTTCTTTGATGCTTTCAAGAATTATGATGAAGCTGGTAGTCAGAGACGTATCCAATGTTTGAAgtaggtgaagcagcattctttttactatctgtatatag---caataactttatatttcacttcagcatataaaacaatgtaattaaccacaataactattttg
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ATATGGCTGAGAGGCAGTGGGCTGAGGCTGCGACTGATTTCTTTGAAGCTTTCAAGAACTACGATGAAGCAGGCAATCCACGGAGAATCCAATGCCTAAAgtatactcatctatacttcattt-ctttctgtacagaagttttagaacactctaatacatatcgataaatatatttttggttttttttgccgtg--tattag-
upper sequence: GLYMA19G17660.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 7
ATATGGCTGAGCGCCAGTGGGCAGATGCAGCTACTGATTTCTTTGATGCTTTCAAGAATTATGATGAAGCTGGTAGTCAGAGACGTATCCAATGTTTGAAgtaggt----------gaagcagcattcttt------ttactatctgtatatagcaataactttata----tttcacttcagcatataaaacaatgtaattaaccacaataactattttg--------------
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ATATGGCAGAGCGCCAATGGGCAGATGCAGCAACTGACTTTTTTGAAGCTTTTAAGAATTATGATGAAGCTGGGAATCAGCGACGTATCCAATGCTTAAAgtatgctatggcttgggaagttgaattatttactcgtcttttatatgtctattttgaaagattcataagcatatttttataatcattttggtactattgtttgacactggatctatttctgcaccacctgatag
upper sequence: GLYMA19G17660.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S105_216V6.1 (Physcomitrella patens), 5'ss of exon 7
ATATGGCTGAGCGCCAGTGGGCAGATGCAGCTACTGATTTCTTTGATGCTTTCAAGAATTATGATGAAGCTGGTAGTCAGAGACGTATCCAATGTTTGAAgtaggtgaag--cag------cattctttttactatctgtatatagcaataactttatatttcacttcagcatataaaacaatgt-aattaaccacaataactattttg
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ACATGGCTGAGCGGCAGTGGGCCGTTGCAGCCACTGACTTTTTTGATGCATTCAAGAACTACGATGAGGCTGGTACCCACAGGAGAATCCAGTGTTTGAAgtatgtgaatttcaaattgcttgttcttcaagttacttgcttcgagctgtgagtcggtagtaattggaagttttagaaataatttgaagtaactgaagta---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15285921|gb|BI469812.1|BI469812EST: TTCAAGAATTATGATGAAGCTGGTAGTCAGAGACGTATCCAATGTTTGAA ATACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGA
genomic: TTCAAGAATTATGATGAAGCTGGTAGTCAGAGACGTATCCAATGTTTGAAgtaggtgaag ... tatgagtcagATACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAATCCATTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGGCTGAGCGCCAGTGGGCAGATGCAGCTACTGATTTCTTTGATGCTTTCAAGAATTATGATGAAGCTGGTAGTCAGAGACGTATCCAATGTTTGAAgtaggtgaagcagcattctttttactatctgtatatagcaataactttatatttcacttcagcatataaaacaatgtaattaaccacaataactattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG