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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATTTTGGATAATAGAATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgttatattttgatttgttaaattaaattcgtcatattcatctttcttttatataaaacataatatttactaacatattcacggtccag

Basic information

species Glycine max
transcript GLYMA19G17660.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17660.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 11
CTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATTTTGGATAATAGAATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgttatattttgatttgttaaattaaattcgtcatattcatctttcttttatataaaacataatatttactaacatattcacggtccag
| ||| | |||||||||||||| |||||||| ||||||||||||||  |||| |||||||||||||||||||||||||| || ||||| ||   ||| ||||   |   | || ||||  ||| || | |            ||   |  || || |||    || || || |    |    |||  |  ||||||
CAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtt-tcatttttttttttattgatt------------atctgttgttgttgtatcgttaatattatttaccttggtttatctattgtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4290274|gb|AI441595.1|AI441595
EST:     ATCCAAGGGCATATTGATCAAGTGANCCGGTTCTTAGAACGCTCTGATAG                         GTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
genomic: ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgt ... cacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT