Sequence
atgc intronic sequence ATGC exonic sequenceAGATTGTGGTTTAAGACAAATCTGAAGCTTTGCAAGATATATTTTGATATTGGTGAATATGGGCGCATGAGTAAGgtgattttgctttttgcatgcaactttttgttcaacttaatttgggtgcctttgtatgtttttattggcatatagtatttaccatttaataatttgatag...
Basic information
species | Glycine max |
transcript | GLYMA19G17660.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G17660.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g17180.1 (Oryza sativa), 5'ss of exon 5
AGATTGTGGTTTAAGACAAATCTGAAGCTTTGCAAGATATATTTTGATATTGGTGAATATGGGCGCATGAGTAAGgtgattttgc---tttttgcatgcaactt-tttgttcaacttaatttgggtgcctttgtatgtttttattggcatatagtatttaccatttaataatttgatag
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AGATTATGGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGgtgcttatacaagtttctctagtcaattggttttctttacatattctgcagtcattactctaattattttg-ctcgtaacttcttcc-tgtag-----------
upper sequence: GLYMA19G17660.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 5
AGATTGTGGTTTAAGACAAATCTGAAGCTTTGCAAGATATATTTTGATATTGGTGAATATGGGCGCATGAGTAAGgtgattttg-----ctttttg--catgcaactttttgttcaacttaatttgggtgcctttgtatgtttttattggcatatagtatttaccatttaataatttgatag----------
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AGATTGTGGTTTAAGACAAATCTTAAGCTTTGCAAGATTTGGTTCGACATGGGTGAATATGGGCGAATGAGTAAGgtatttttttagccctgtttggtcagatgacgcattcctgctctgttctcatgtgcccttatatatatgtaa-aacattttattatggtaatctaaggatttttggacactgaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15285921|gb|BI469812.1|BI469812EST: AGCTTTGCAAGATATATTTTGATATTGGTGAATATGGGCGCATGAGTAAG ATCTTGAAGGAACTTCACAAATCCTGTCAAAAAGAAGATGGCACAGATGAC
genomic: AGCTTTGCAAGATATATTTTGATATTGGTGAATATGGGCGCATGAGTAAGgtgattttgc ... gccctgccagATCTTGAAGGAACTTCACAAATCCTGTCAAAAAGAAGATGGCACAGATGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATTGTGGTTTAAGACAAATCTGAAGCTTTGCAAGATATATTTTGATATTGGTGAATATGGGCGCATGAGTAAGgtgattttgctttttgcatgcaactttttgttcaacttaatttgggtgcctttgtatgtttttattggcatatagtatttaccatttaataatttgatag
- - - - - - - - - - - - - - - GCAAGA