1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgtactctacatataccacatagtaatacttgtttgagaatcttactagtgtaagaaactattacattttgcacttaattttcattctgtattttatcagGGGATTTAAAGCTCTAAAACAGACTGTCAAGCTACATTATCGACTGGGAAGGCATAAAGAGATGATGAAAGCCTATAGGGAGATGCTGACATATATTAAG
species | Glycine max |
transcript | GLYMA19G17660.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGCTGGTTTTGCTCAGGTAGTGCAAATGGAACAAGAAAAAGCAGAATG GGGATTTAAAGCTCTAAAACAGACTGTCAAGCTACATTATCGACTGGGAAGEST: gi|209701342|gb|BW655938.1|BW655938
genomic: CTTGCTGGTTTTGCTCAGGTAGTGCAAATGGAACAAGAAAAAGCAGAATGgtaagaactc ... attttatcagGGGATTTAAAGCTCTAAAACAGACTGTCAAGCTACATTATCGACTGGGAAG
EST: CTTGCTGGTTTTGCTCAGGTAGTGCAAATGGAACAAGAAAAAGCAGAATG GGGATTTAAAGCTCTAAAACAGACTGTCAAGCTA-AGTTATCGACTGGGAAEST: gi|209709017|gb|BW673949.1|BW673949
genomic: CTTGCTGGTTTTGCTCAGGTAGTGCAAATGGAACAAGAAAAAGCAGAATGgtaagaactc ... attttatcagGGGATTTAAAGCTCTAAAACAGACTGTCAAGCTACA-TTATCGACTGGGAA
EST: CTTGCTGGTTTTGCTCAGGTAGTGCAAATGGAACAAGAAAAAGCAGAATG GGGATTTAAAGCTCTAAAACAGACTGTCAAGCTACATTATCGACTGGGAAG
genomic: CTTGCTGGTTTTGCTCAGGTAGTGCAAATGGAACAAGAAAAAGCAGAATGgtaagaactc ... attttatcagGGGATTTAAAGCTCTAAAACAGACTGTCAAGCTACATTATCGACTGGGAAG
ctagtgtaagaaactattacattttgcacttaattttcattctgtattttatcagGGGATTTAAAGCTCTAAAACAGACTGTCAAGCTACATTATCGACTGGGAAGGCATAAAGAGATGATGAAAGCCTATAGGGAGATGCTGACATATATTAAG
acttaat putative branch site (score: 4)
ttttatc putative PPT
ttaattttcattctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtactctacatataccacatagtaatacttgtttgagaatcttactagtgtaagaaactattacattttgcacttaattttcattctgtattttatcagGGGATTTAAAGCTCTAAAACAGACTGTCAAGCTACATTATCGACTGGGAAGGCATAAAGAGATGATGAAAGCCTATAGGGAGATGCTGACATATATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG