Sequence
atgc intronic sequence ATGC exonic sequencegtcttgccgttatattttgatttgttaaattaaattcgtcatattcatctttcttttatataaaacataatatttactaacatattcacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCTTAAATCTCTTTATCAAACTATTAACAACAGAGTTTCTTAAAACGTGTAT
Basic information
species | Glycine max |
transcript | GLYMA19G17660.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G17660.3 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 3'ss of exon 11
gtcttgccgttatattttgatttgttaaattaaattcgtcatattcatctttcttttatataaaacataatatttactaacatattcacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCTTAAATCTCTTTATCAAACTATTAACAACAGAGTTTCTTAAAACGTGTAT
||| ||| ||| || || ||| | ||| | || || ||| || || || | | ||| | |||||| |||||||||||||||||||| | ||||| || ||||||||||| ||||||||||| |||||||||||||||| ||| |||| || | | |||||
--------gttgagtttcattttttt---ttttattgat--tatctgttgttgttgtatcgttaatattatttaccttggtttatctattgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCTTAAATCCCTTTATCAAACTATTAGCAATCGAGTGGGTTGAGAGTTGTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4290274|gb|AI441595.1|AI441595EST: ATCCAAGGGCATATTGATCAAGTGANCCGGTTCTTAGAACGCTCTGATAG GTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
genomic: ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgt ... cacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcatctttcttttatataaaacataatatttactaacatattcacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCTTAAATCTCTTTATCAAACTATTAACAACAGAGTTTCTTAAAACGTGTAT
tactaac putative branch site (score: 0)
atctttcttttatata TA-rich tract