1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacttttattgaatctgccatgagattatgctatgcactagtttggctttaaagtattcatcctcttttttctatttaatactttattttaaatgaatattgcataatgtactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAGGATCTGCTAAAGAATATTAGAACCCAAGTCTTGCTGAAGCTTATCAAAC
species | Glycine max |
transcript | GLYMA19G17660.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAG AGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAGEST: gi|8827812|gb|BE211542.1|BE211542
genomic: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAGgtacttttat ... tactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAG
EST: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAG AGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAGEST: gi|192294900|gb|FG987589.1|FG987589
genomic: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAGgtacttttat ... tactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAG
EST: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAG AGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAGEST: gi|27426986|gb|CA938506.1|CA938506
genomic: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAGgtacttttat ... tactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAG
EST: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAG AGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAGEST: gi|22523533|gb|BU082344.1|BU082344
genomic: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAGgtacttttat ... tactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAG
EST: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAG AGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAG
genomic: TAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAGgtacttttat ... tactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAG
cttttttctatttaatactttattttaaatgaatattgcataatgtactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAGGATCTGCTAAAGAATATTAGAACCCAAGTCTTGCTGAAGCTTATCAAAC
atttaat putative branch site (score: 4)
tactttcc putative PPT
ttctatttaatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttattgaatctgccatgagattatgctatgcactagtttggctttaaagtattcatcctcttttttctatttaatactttattttaaatgaatattgcataatgtactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAGGATCTGCTAAAGAATATTAGAACCCAAGTCTTGCTGAAGCTTATCAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC