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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatgttcccactgccatcgaacaaattaaaggaatacccaagaaaaaattgtagagcttaagttgatgttactttttcatttgataataagatttatttgttaaattgaatagatacttatggttaatctaatactctttatataacacaaaacccatcaatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATTTTGGATAATAGAATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAG

Basic information

species Glycine max
transcript GLYMA19G17660.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17660.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 3'ss of exon 10
gtaattatgttcccactgccatcgaacaaattaaaggaatacccaagaaaaaattgtagagcttaagttgatgttactttttcatttgataataagatttatttgttaaattgaatagatacttatggttaatctaatac-tctttatataacacaaaacccatcaatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATTTTGGATAATAGAATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAG
                                                                    |  | ||| |||| |  ||  |  |    || |||| |||||||   ||  |   | |    || ||   |  ||||| |||   ||  ||  |||     | ||||| || ||||| || ||| | |||||||||||||| |||||||| ||||||||||||||  |||| |||||||||||||||||||||||||| || ||||
--------------------------------------------------------------------tattcttatttttactatttttttt----ttcattt-ttaaattttttaagtttgtgtccaaaacctgccaagtctttgtatt-tactcaattcattgccattcagGAGCTGAATGTGCCAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAG

upper sequence: GLYMA19G17660.1 (Glycine max), 3'ss of exon 10
lower sequence: PP1S124_47V6.1 (Physcomitrella patens), 3'ss of exon 10
gtaattatgttcccactgccatcgaacaaattaaaggaatacccaagaaaaaattgtagagcttaagttgatgttactttttcatttgataataagatttatttgttaaattgaatagatacttatggttaatctaatactctttatataacacaaaacccatcaatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATTTTGGATAATAGAATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAG
                                                              ||   | ||||  |||  ||   |||| ||  |   |  | |||||||     | |||      | || | ||  || || | ||     ||        |      |||||| || ||  | |||||  | ||||| ||||| ||  | || || || ||| | ||||||||| |||| || |||||||||||||||||||  ||  | |
-----------------------------------------------------------gttttgtttggatgcaactcatt---ttgagaaggattatattgtgttaaaagattttgatctg---gattcagctgctaatcgtgattgtttac--------ttggagcgcagGAGCTGAACATACCTGAAAAGGATGTGGAGCAACTTCTTGTATCCCTCATTCTAGATAATAGAGTCCATGGTCATATTGATCAAGTGAACCAATTGCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16106217|gb|BI893957.1|BI893957
EST:     TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAA                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
genomic: TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAAgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
EST: gi|8827812|gb|BE211542.1|BE211542
EST:     TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAA                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
genomic: TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAAgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
EST: gi|192294900|gb|FG987589.1|FG987589
EST:     TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAA                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
genomic: TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAAgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
EST: gi|21994507|gb|BQ786035.1|BQ786035
EST:     TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAA                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
genomic: TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAAgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
EST: gi|209709018|gb|BW673950.1|BW673950
EST:     TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAA                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
genomic: TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAAgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
EST: gi|27426986|gb|CA938506.1|CA938506
EST:     TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAA                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
genomic: TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAAgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
EST: gi|22523533|gb|BU082344.1|BU082344
EST:     TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAA                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT
genomic: TGAAGCTTATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAAgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacttatggttaatctaatactctttatataacacaaaacccatcaatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATTTTGGATAATAGAATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAG
                           atataac  putative branch site (score: 3)
          ttaatctaatactctt  TA-rich tract