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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttgccgttatattttgatttgttaaattaaattcgtcatattcatctttcttttatataaaacataatatttactaacatattcacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCTTAAATCTCTTTATCAAACTATTAACAACAGAGTTTCTTAAAACGTGTAT

Basic information

species Glycine max
transcript GLYMA19G17660.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17660.3 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 3'ss of exon 11
gtcttgccgttatattttgatttgttaaattaaattcgtcatattcatctttcttttatataaaacataatatttactaacatattcacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCTTAAATCTCTTTATCAAACTATTAACAACAGAGTTTCTTAAAACGTGTAT
        |||   |||   ||| ||   ||  |||  |  |||   |  || || |||    || || || |    |    |||  |  |||||| ||||||||||||||||||||  | ||||| || ||||||||||| ||||||||||| |||||||||||||||| |||  ||||   || | |  |||||
--------gttgagtttcattttttt---ttttattgat--tatctgttgttgttgtatcgttaatattatttaccttggtttatctattgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCTTAAATCCCTTTATCAAACTATTAGCAATCGAGTGGGTTGAGAGTTGTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16106217|gb|BI893957.1|BI893957
EST:     ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAG                         GTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
genomic: ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgt ... cacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
EST: gi|192294900|gb|FG987589.1|FG987589
EST:     ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAG                         GTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
genomic: ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgt ... cacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
EST: gi|21994507|gb|BQ786035.1|BQ786035
EST:     ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAG                         GTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
genomic: ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgt ... cacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
EST: gi|209709018|gb|BW673950.1|BW673950
EST:     ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAG                         GTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
genomic: ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgt ... cacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
EST: gi|4290274|gb|AI441595.1|AI441595
EST:     ATCCAAGGGCATATTGATCAAGTGANCCGGTTCTTAGAACGCTCTGATAG                         GTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
genomic: ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgt ... cacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
EST: gi|22523533|gb|BU082344.1|BU082344
EST:     ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAG                         GTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT
genomic: ATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgt ... cacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcatctttcttttatataaaacataatatttactaacatattcacggtccagGTCGAAAGGAATGAAGAAGTACACTGCAGTTGACAAATGGAACACGCAGCTTAAATCTCTTTATCAAACTATTAACAACAGAGTTTCTTAAAACGTGTAT
                                 tactaac  putative branch site (score: 0)
     atctttcttttatata  TA-rich tract