1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtcctctgtattttgtttttaatatattttactcaattttcatttctctgattctgttctttatccactgaggtgaggatgatataccttcacttctttctgttctcaccttgcatatattctatactgcagATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAG
species | Glycine max |
transcript | GLYMA19G17660.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCC ATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTAEST: gi|192294900|gb|FG987589.1|FG987589
genomic: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCCgtaagtcctc ... tatactgcagATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTA
EST: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCC ATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTAEST: gi|27426986|gb|CA938506.1|CA938506
genomic: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCCgtaagtcctc ... tatactgcagATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTA
EST: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCC ATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTAEST: gi|15285921|gb|BI469812.1|BI469812
genomic: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCCgtaagtcctc ... tatactgcagATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTA
EST: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCC ATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTAEST: gi|22523533|gb|BU082344.1|BU082344
genomic: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCCgtaagtcctc ... tatactgcagATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTA
EST: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCC ATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTA
genomic: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGACAGGAAGCTAAGCCgtaagtcctc ... tatactgcagATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTA
gatgatataccttcacttctttctgttctcaccttgcatatattctatactgcagATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAG
ttctcac putative branch site (score: 2)
atatattctatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcctctgtattttgtttttaatatattttactcaattttcatttctctgattctgttctttatccactgaggtgaggatgatataccttcacttctttctgttctcaccttgcatatattctatactgcagATACAAGAATGACCCCGAAATTTTGGTAATGACAAACTTAATAGCAGCTTATCAACGGAATGAAATATCGGAATTCGAGAAAATCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG