1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacttcatatggttggttatgctggagatgtatcatttatataattatatgtatatagaaaatgagctagtgactctgattatcattatacttatcgagttttctctgggtggacttccttgtctagGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGCTATTGTCAGTTGTTCATGTTGCCCTGAAGGGAACAACTGTCTTGAAGGG
species | Glycine max |
transcript | GLYMA19G14000.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAGACATTTCTAGTTTGAACTTCATAAAATGATGAAGCATAGATTACAG GTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGCEST: gi|17964391|gb|BM271127.1|BM271127
genomic: CCAGACATTTCTAGTTTGAACTTCATAAAATGATGAAGCATAGATTACAGgtacttcata ... ccttgtctagGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGC
EST: CCAGACATTTCTAGTTTGAACTTCATAAAATGATGAAGCATAGATTACAG GTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGCEST: gi|254331376|gb|GR843388.1|GR843388
genomic: CCAGACATTTCTAGTTTGAACTTCATAAAATGATGAAGCATAGATTACAGgtacttcata ... ccttgtctagGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGC
EST: GTTTGAACTTCATAAAATGATGAAGCATAGATTACAG GTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGC
genomic: GTTTGAACTTCATAAAATGATGAAGCATAGATTACAGgtacttcata ... ccttgtctagGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGC
actctgattatcattatacttatcgagttttctctgggtggacttccttgtctagGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGCTATTGTCAGTTGTTCATGTTGCCCTGAAGGGAACAACTGTCTTGAAGGG
ctctgat putative branch site (score: 4)
cttccttgtct putative PPT
attatcattatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttcatatggttggttatgctggagatgtatcatttatataattatatgtatatagaaaatgagctagtgactctgattatcattatacttatcgagttttctctgggtggacttccttgtctagGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGCTATTGTCAGTTGTTCATGTTGCCCTGAAGGGAACAACTGTCTTGAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG