1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAgtaagctttctcggtgttgaagtgttatctatatgtttgctttagttgagtaaaattatggtgaacttttgttgtgcttttttttttttttaatggaatt...
species | Glycine max |
transcript | GLYMA19G14000.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTAATGTACAA AACTTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACEST: gi|21678014|gb|BQ630365.1|BQ630365
genomic: TGTAATGTACAAgtaagctttc ... ttttccacagAAC-TGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAAC
EST: GATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAA AACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTEST: gi|20813414|gb|BQ297892.1|BQ297892
genomic: GATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAgtaagctttc ... ttttccacagAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACT
EST: GATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGAT--AA----C-- ---TGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTEST: gi|193314898|gb|FK281398.1|FK281398
genomic: GATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAgtaagctttc ... ttttccacagAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACT
EST: GATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAA AACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAAATTAATGTTCAACEST: gi|51336558|gb|CO980424.1|CO980424
genomic: GATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAgtaagctttc ... ttttccacagAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAA-TTAATGTTCAAC
EST: TCCACGAAATGTTTGATGTAATGTACAA AACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACT
genomic: TCCACGAAATGTTTGATGTAATGTACAAgtaagctttc ... ttttccacagAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAgtaagctttctcggtgttgaagtgttatctatatgtttgctttagttgagtaaaattatggtgaacttttgttgtgcttttttttttttttaatggaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC