1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatggctaagtttgttcatatccaaacttttgaaactaatttcatgttacgatctgatggtaattgcccatatgcttatgtataattgttgtgtctgcagGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAG
species | Glycine max |
transcript | GLYMA19G14000.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAA GGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGTTAGTATTTGTEST: gi|105633838|gb|DW247201.1|DW247201
genomic: TGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAgtatgttttt ... gtgtctgcagGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGT
EST: TGTCTGACCTTCCTGCACGAATATTTCAGCATGAATTTGACCATCTACAA GGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATGGTATTTGTEST: gi|51336558|gb|CO980424.1|CO980424
genomic: TGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAgtatgttttt ... gtgtctgcagGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGT
EST: TGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAA GGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGT
genomic: TGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAgtatgttttt ... gtgtctgcagGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGT
gttacgatctgatggtaattgcccatatgcttatgtataattgttgtgtctgcagGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAG
atctgat putative branch site (score: 4)
ttatgtataattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggctaagtttgttcatatccaaacttttgaaactaatttcatgttacgatctgatggtaattgcccatatgcttatgtataattgttgtgtctgcagGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT