1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatattttaatctatatacaaaatctttcattactttctttttttcataaaaaaatattatatttttttcaaaaattaacccatgtatataacatccagGAAGCATAGCTACTCAATGCCTCAACATATTTGAAAGAGAAACTCTAAAGTTCGCGAGTTTTCACCAATCAGGAGCAAAATATGTAATCTTATGACTTAT
species | Glycine max |
transcript | GLYMA19G14000.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAGAATGACTGAAGAAGTTCTTGTTAGTATTTGTGGACAGTTACAG GAAGCATAGCTACTCAATGCCTCAACATATTTGAAAGAGAAACTCTAAAGTEST: gi|51336558|gb|CO980424.1|CO980424
genomic: TTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGgttagaaaaa ... taacatccagGAAGCATAGCTACTCAATGCCTCAACATATTTGAAAGAGAAACTCTAAAGT
EST: TTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAG GAAGCATAGCTACTCAATGCCTCAACATATTTGAAAGAGAAACTCTAAAGT
genomic: TTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGgttagaaaaa ... taacatccagGAAGCATAGCTACTCAATGCCTCAACATATTTGAAAGAGAAACTCTAAAGT
tcataaaaaaatattatatttttttcaaaaattaacccatgtatataacatccagGAAGCATAGCTACTCAATGCCTCAACATATTTGAAAGAGAAACTCTAAAGTTCGCGAGTTTTCACCAATCAGGAGCAAAATATGTAATCTTATGACTTAT
aaaaaatattatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatattttaatctatatacaaaatctttcattactttctttttttcataaaaaaatattatatttttttcaaaaattaacccatgtatataacatccagGAAGCATAGCTACTCAATGCCTCAACATATTTGAAAGAGAAACTCTAAAGTTCGCGAGTTTTCACCAATCAGGAGCAAAATATGTAATCTTATGACTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - -caaaatc
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgta