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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaacacacaaatcccttgttaaatgtaaggtgcatctaaaagattgaagtatctaaccagcctttttagcataaccatacttcaaggtttgctaa...

Basic information

species Glycine max
transcript GLYMA19G14000.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193322589|gb|FK290365.1|FK290365
EST:     TATTTAATGAAGGTTGCCTATCTTTCCCAGGCATCAATGCTGATGTAAAG                         CGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACTAAGG
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAAC-AAGG
EST: gi|21678014|gb|BQ630365.1|BQ630365
EST:     TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAG                         CGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGA
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGA
EST: gi|20813414|gb|BQ297892.1|BQ297892
EST:     TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAG                         CGACCAGAATCTGTGAA
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAA
EST: gi|105633838|gb|DW247201.1|DW247201
EST:     TATTTAATAAAGGTTGCCTATCTTTCCCAGGCATCAATGCTGATGTAAAG                         CGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGCACAAGGTTT
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTT
EST: gi|51336558|gb|CO980424.1|CO980424
EST:     TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAG                         CGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTT
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaacacacaaatcccttgttaaatgtaaggtgcatctaaaagattgaagtatctaaccagcctttttagcataaccatacttcaaggtttgctaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT