Sequence
atgc intronic sequence ATGC exonic sequence...acttaataacatgcacctttctttctttctgtcttgtgagcttctaaagggatcatatcaaatgtatctaacatagctttgacacttgaaattttctcagATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAG
Basic information
species | Glycine max |
transcript | GLYMA19G08270.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G08270.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 8
--acttaataacatgcacctttctttctttctgtcttgtgagcttcta----aagggatcatatcaaatgtatctaacatagctttgacacttgaaatttt----ctcagATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAG
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gtatgtgcacagatttaatttaagtacagaacattttgaaaatttgtactgtaaggaactgttttatggat-tcaaataaatctttattgattattacttaaatatgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG
upper sequence: GLYMA19G08270.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S129_53V6.1 (Physcomitrella patens), 3'ss of exon 10
-----------------acttaataacatgcacctttctttctttctgtcttgtgagcttctaaagggatcatatcaaatgtatctaacatagctttgacacttgaaattttctcagATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAG
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gtaataagtcaacctgtatttagttagtgattcgtgtcttaccttcctcctt-tggtcgttgaaatttactgtctgttagttgttgggtatttacttcttgtttaatactg---cagATTTGTTGAGATCATGGCTCCTGTGTTTTCACGAAAAGCATGGCGTTGCATCTGGTACATAATACAG
upper sequence: GLYMA19G08270.1 (Glycine max), 3'ss of exon 9
lower sequence: EFJ06933 (Selaginella moellendorffii), 3'ss of exon 9
acttaataacatgcacctttctttctttctgtcttgtgagcttctaaagggatcatatcaaatgtatctaacatagctttgacacttgaaattttctcagATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAG---------------------------------
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-----------------------------------gtaagtcttggctttcacttggacatagatttcta-------tttcttagtggtgtttctggcagATTTGTGGAGATCATGGCTCCGGTGTTTTCCAGGAATGCTTGGAGATGCGTGTGGCATATGATACAAAACGATTTGGTACACGGTTGGGGCCTCGACTTC
upper sequence: GLYMA19G08270.1 (Glycine max), 3'ss of exon 9
lower sequence: EFJ09147 (Selaginella moellendorffii), 3'ss of exon 6
acttaataacatgcacctttctttctttctgtcttgtgagcttctaaagggatcatatcaaatgtatctaacatagctttgacacttgaaattttctcagATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAG---------------------------------
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--------------------------gtaagtcttg---gctttcacttgga-cat---agatttctatttcttagtgttgtttctgg---------cagATTTGTGGAGATCATGGCTCCGGTGTTTTCCAGGAATGCTTGGAGATGCGTGTGGCATATGATACAAAACGATTTGGTACACGGTTGGGGCCTCGACTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51336942|gb|CO980808.1|CO980808EST: GAGGAAAGAAGTGGTTGGTGTTCTGATCCACATTTGCCACCATGTGCTGC ATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGT
genomic: GAGGAAAGAAGTGGTTGGTGTTCTGATCCACATTTGCCACCATGTGCTGCgtaagcaaat ... attttctcagATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagggatcatatcaaatgtatctaacatagctttgacacttgaaattttctcagATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAG
ttttctc CT-rich tract
ttgaaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acttaataacatgcacctttctttctttctgtcttgtgagcttctaaagggatcatatcaaatgtatctaacatagctttgacacttgaaattttctcagATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - -catgcac
- - - - - - - - - - - - - ttctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - -catatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacact