Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtagggtgtataatttttccttcatattcttaaattgctctttcatagcttgtcaagtgagaagtgacctagctaacacatgaattttgtcccatgttattaattgttagATGAACCTTCCATCCAGCCTTTTACCATCTATTGATCTAACTTATGTTGATGACAATTACTCGAAAATTTCAACCAAGTCTTTGTGGGATGCTTGGGCTT

Basic information

species Glycine max
transcript GLYMA19G08270.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231844|gb|BE800732.1|BE800732
EST:     TTTTTGGCTTCTCTCTAGGAGTATCATTTCCAACACTGGCATTGACTAGG                         ATGAACCTTCCATCCAGCCTTTTACCATCTATTGATCTAACTTATGTTGAT
genomic: TTTTTGGCTTCTCTCTAGGAGTATCATTTCCAACACTGGCATTGACTAGGgtcagtaggg ... taattgttagATGAACCTTCCATCCAGCCTTTTACCATCTATTGATCTAACTTATGTTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgagaagtgacctagctaacacatgaattttgtcccatgttattaattgttagATGAACCTTCCATCCAGCCTTTTACCATCTATTGATCTAACTTATGTTGATGACAATTACTCGAAAATTTCAACCAAGTCTTTGTGGGATGCTTGGGCTT
                                          tattaat  putative branch site (score: 2)
                                      atgttattaattgtta  TA-rich tract