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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtagtttttaactttcttttgataagaacccactttggcacgattggatttgtaccaaatgatatttattgatttgattggatgcagCCTCCTCACGAGAAAATAGGAGTGGTTGACACTCAATGGGTTGTCCACCAAAGTGTTCCATCACTTGGGAACCAG

Basic information

species Glycine max
transcript GLYMA19G08270.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G08270.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 10
gttagtagtttttaactttcttttgataagaacccactttggcacgattggatttgtaccaaatgatatttattgatttgattggatgcagCCTCCTCACGAGAAAATAGGAGTGGTTGACACTCAATGGGTTGTCCACCAAAGTGTTCCATCACTTGGGAACCAG
      |||    |  ||||| ||  |   ||| || ||  |    |||    ||||    | |   | |   |   ||  ||| |  |||||| |||| |||||||||||||| || ||| | || ||| || | || ||||||||||| |||||||||||||||
---gtcagtgacaagttttctctttct---aactcaatt--gtttaatttctcttgtttacattataaatccctatatttcttgaaaacagCCTGCTCATGAGAAAATAGGAGTTGTAGACGCCCAGTGGATTCTACATCAAAGTGTTCCCTCACTTGGGAACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336942|gb|CO980808.1|CO980808
EST:     ACCTAGTTCATGGATGGGGCCTTGATTTCGTTCTCAGAAAATGTGTGGAG                         CCTCCTCACGAGAAAATAGGAGTGGTTGACACTCAATGGGTTGTCCACCAA
genomic: ACCTAGTTCATGGATGGGGCCTTGATTTCGTTCTCAGAAAATGTGTGGAGgttagtagtt ... ttggatgcagCCTCCTCACGAGAAAATAGGAGTGGTTGACACTCAATGGGTTGTCCACCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttggcacgattggatttgtaccaaatgatatttattgatttgattggatgcagCCTCCTCACGAGAAAATAGGAGTGGTTGACACTCAATGGGTTGTCCACCAAAGTGTTCCATCACTTGGGAACCAG
                        aaatgatatttattga  TA-rich tract