Sequence
atgc intronic sequence ATGC exonic sequenceATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAGgtttatatgaggactcattttgtgtcttctatttttttttattttcaccacacaattcgattcatatatatctaacttgttcttcacgtgccactttgcag
Basic information
species | Glycine max |
transcript | GLYMA19G08270.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G08270.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 9
ATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAGgtttatatgaggactcattttgtgtcttctatttttttttattttcaccacacaattcgattcatatatatctaacttgttcttcacgtgccactttgcag
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CTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAGgtttg---gggcattcttttttcatactgtagctattgacacttat-ccatttattcctatcaagggatacctctgaaattgttgccatgctactt-gcag
upper sequence: GLYMA19G08270.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S129_53V6.1 (Physcomitrella patens), 5'ss of exon 11
ATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAGgtttatatgaggactcattttgtgtcttctatttttttttattttcaccacacaattcgattcatatat--atctaactt-gttcttcacgtgccactttgcag
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ATTTGTTGAGATCATGGCTCCTGTGTTTTCACGAAAAGCATGGCGTTGCATCTGGTACATAATACAGg--tacattacta-tgaccttcaatgatgtgtcctctttaactgagacggaacactggagtgaggattttcatctaattttattattcttgttcctggttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51336942|gb|CO980808.1|CO980808EST: CTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAG AACGACCTAGTTCATGGATGGGGCCTTGATTTCGTTCTCAGAAAATGTGTG
genomic: CTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAGgtttatatga ... cactttgcagAACGACCTAGTTCATGGATGGGGCCTTGATTTCGTTCTCAGAAAATGTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAGgtttatatgaggactcattttgtgtcttctatttttttttattttcaccacacaattcgattcatatatatctaacttgttcttcacgtgccactttgcag
- - - - - - - - - - - - - - - - GAGATG