Sequence
atgc intronic sequence ATGC exonic sequenceGGTATGCTAAACGCTTTCTGCATCCTGACATTGTGGCTCCTTATGACTACATCTTTATTTGGGATGAGGATCTTGGTGTGGAGCATTTTGATGCAGAAGAgtgagtatctaacagtcaaaaccgttccttatagtgtgggaatcaaagtgttagtgaaatttttttaatcaaatatctctgtcccag
Basic information
species | Glycine max |
transcript | GLYMA19G08270.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G08270.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 8
GGTATGCTAAACGCTTTCTGCATCCTGACATTGTGGCTCCTTATGACTACATCTTTATTTGGGATGAGGATCTTGGTGTGGAGCATTTTGATGCAGAAGAgtgagtatctaacagtcaaaaccgttccttatagtgtgggaatcaaagtgttagtga--aatttttttaatcaaatatctctgtcccag
|||| ||||| || ||||| ||||||||||| || || || ||||| || ||||| || ||||||||||||||||| ||||| || |||||| | ||| ||| || | | | || || |||||| || | | | || | || | || || ||| || ||
GGTACGCTAAGCGATTTCTTCATCCTGACATAGTTGCCCCCTATGAATATATCTTCATATGGGATGAGGATCTTGGCGTGGAACACTTTGATTCGGAAAAgtatgtttttga-agcttggac--ttccttttaata-gacattccaggttatgaagattaaatttcttggacag---------------
upper sequence: GLYMA19G08270.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 6
GGTATGCTAAACGCTTTCTGCATCCTGACATTGTGGCTCCTTATGACTACATCTTTATTTGGGATGAGGATCTTGGTGTGGAGCATTTTGATGCAGAAGAgtgagtatctaacagtcaaaaccgttccttatagtgtgggaatcaaagtgttag-tgaaatttttttaatcaaatatctctgt-cccag
||||||| || || ||| ||||||||||||||||||| || ||||||||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||||||| ||| | | | || | | | | | | ||| ||| ||| | | |||||| | || | | | |||
GGTATGCCAAGCGGTTTTTGCATCCTGACATTGTGGCACCCTATGACTACATATTTATGTGGGATGAAGACCTTGGGGTGGAGCATTTTGATGCAGAAGAgtgagtgtctgaaatttaatatcctgctgt---gaatggaaatactgttgtgaactagaattttaaggcttctattcttttatattcag
upper sequence: GLYMA19G08270.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S129_53V6.1 (Physcomitrella patens), 5'ss of exon 8
GGTATGCTAAACGCTTTCTGCATCCTGACATTGTGGCTCCTTATGACTACATCTTTATTTGGGATGAGGATCTTGGTGTGGAGCATTTTGATGCAGAAGAgtgagtatctaacagtcaaa-accgttccttatagtgtgggaatcaaagtgttagtg------aaatttttttaatcaaatatctctgtcccag------------------------------------------------------------------------------
||||||| || || ||| |||| || || | ||||| || ||||| |||||||| ||||||||||||||||||| | || ||||||| || | | | |||| | | | | | | ||| ||| || | | || | | | ||| | | || | || | |
GGTATGCCAAGCGGTTTTTGCACCCCGATGTAGTGGCGCCGTATGAGTACATCTTCATTTGGGATGAGGATCTTGATTTGAGGCATTTTAATCCTAAGAGgcaagtacat--ctgccgtatattactccgactagctcattcgtcgatttagtaaagcctcatacgcatgttttagaaggattccttttcgcggttgctctcaaagagaaaagtgagacttgaaacttctgaagattttggatttattgatacgggtggactggcttcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51336942|gb|CO980808.1|CO980808EST: ATCTTTATTTGGGATGAGGATCTTGGTGTGGAGCATTTTGATGCAGAAGA GTACTTAAAAATGGTAAGGAAACATGGTTTGGAGATCTCACAGCCTGGTAT
genomic: ATCTTTATTTGGGATGAGGATCTTGGTGTGGAGCATTTTGATGCAGAAGAgtgagtatct ... tctgtcccagGTACTTAAAAATGGTAAGGAAACATGGTTTGGAGATCTCACAGCCTGGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTATGCTAAACGCTTTCTGCATCCTGACATTGTGGCTCCTTATGACTACATCTTTATTTGGGATGAGGATCTTGGTGTGGAGCATTTTGATGCAGAAGAgtgagtatctaacagtcaaaaccgttccttatagtgtgggaatcaaagtgttagtgaaatttttttaatcaaatatctctgtcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA