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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCTCACGAGAAAATAGGAGTGGTTGACACTCAATGGGTTGTCCACCAAAGTGTTCCATCACTTGGGAACCAGgtaattgaagatttaatttttttatacaaggcatatttgaaagaacttctatgaaagttatttaaactttatcccatcatatgagcaatcaagtaaaaaa...

Basic information

species Glycine max
transcript GLYMA19G08270.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G08270.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 11
CCTCCTCACGAGAAAATAGGAGTGGTTGACACTCAATGGGTTGTCCACCAAAGTGTTCCATCACTTGGGAACCAGgtaattgaagatttaatttttttatacaaggcatatttgaaagaacttctatgaaagttatttaaactttatcccatcatatgagcaatcaagtaaaaaa
||| |||| |||||||||||||| || ||| | || ||| || | || ||||||||||| |||||||||||||||||||   || | | |  | |   |  ||  |   |||    |   ||| |||      ||  | |   |||     || |     |||            
CCTGCTCATGAGAAAATAGGAGTTGTAGACGCCCAGTGGATTCTACATCAAAGTGTTCCCTCACTTGGGAACCAGgtaa---aacactaagctatc--aaccactgttcatt---gattccttatatatggaatagatgatacttactatttcctgccttcaacag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336942|gb|CO980808.1|CO980808
EST:     TTGACACTCAATGGGTTGTCCACCAAAGTGTTCCATCACTTGGGAACCAG                         GGCCAAGCAGAGAGGGGAAGGGCACCGTGGGAAGGG
genomic: TTGACACTCAATGGGTTGTCCACCAAAGTGTTCCATCACTTGGGAACCAGgtaattgaag ... ctttcaacagGGCCAAGCAGAGAGGGGAAGGGCACCGTGGGAAGGG