1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaactattttttgaagtattgttcaaaatagtataccaaataccccatgaagctactcaggacagttgtaaaagtaatctaattaacatgttggaatgcaGATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCAAAGCAGTTGATTGCTGAGCAGTCTCTTCTTGTCTTTGGGAGAGGATACA
species | Glycine max |
transcript | GLYMA18G47860.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTCTTTTTGATCTGCCA AATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCAEST: gi|6454585|gb|AW185268.1|AW185268
genomic: CAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTCTTTTTGATCTGCCAagtgagtttc ... ttggaatgcaGATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCA
EST: CAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTCTTTNTGATCTGCCA AATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCAEST: gi|151408304|gb|EV278112.1|EV278112
genomic: CAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTCTTTTTGATCTGCCAagtgagtttc ... ttggaatgcaGATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCA
EST: CAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTCTTTTTGACCTGCCA AATAAAGTCAGAGAGGTGCTGAAGCTTGATCAGGAGATGAAGGATCTAGCC
genomic: CAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTCTTTTTGATCTGCCAagtgagtttc ... ttggaatgcaGATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCA
catgaagctactcaggacagttgtaaaagtaatctaattaacatgttggaatgcaGATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCAAAGCAGTTGATTGCTGAGCAGTCTCTTCTTGTCTTTGGGAGAGGATACA
aattaac putative branch site (score: 2)
ttgtaaaagtaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactattttttgaagtattgttcaaaatagtataccaaataccccatgaagctactcaggacagttgtaaaagtaatctaattaacatgttggaatgcaGATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCAAAGCAGTTGATTGCTGAGCAGTCTCTTCTTGTCTTTGGGAGAGGATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - -accccat
- - - - - - - - - - - - - - - - - - - - - - - - - - ctactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtaa