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ggtcagtgctgtatcctgtatgacaaatcttttttaagtttggctgattaaaaagtatgcccattcttacaatgttttattttattttatacattattataGGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGAGAGGGACCAATATACCGGGAGGATACTGCCGTTTTTGTTAGTCAATCTGGTGAAA
species | Glycine max |
transcript | GLYMA18G47860.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGTTATAATGCTGCTTTGGCAGCTAGACCCATCTTGGAAGAACTTTCT GGTGTTCCTGCTACTATGGAAATTGCTAGTGATCTATTGGATCGGGAGGGAEST: gi|6454585|gb|AW185268.1|AW185268
genomic: CAAGTTATAATGCTGCTTTGGCAGCTAGACCCATATTGGAAGAACTTTCAggtcagtgct ... cattattataGGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGAGAGGGA
EST: CAAGTTATAATGCTGCTTTGGCAGCTAGACCCATATTGGAAGAACTTTCA GGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGGGAGGGAEST: gi|151408304|gb|EV278112.1|EV278112
genomic: CAAGTTATAATGCTGCTTTGGCAGCTAGACCCATATTGGAAGAACTTTCAggtcagtgct ... cattattataGGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGAGAGGGA
EST: CAAGTTATAATGCTGCTTTGGCAGCTAGACCCATCTTGGAAGAACTTTCT GGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGGGAGGGAEST: gi|193602233|gb|FK559742.1|FK559742
genomic: CAAGTTATAATGCTGCTTTGGCAGCTAGACCCATATTGGAAGAACTTTCAggtcagtgct ... cattattataGGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGAGAGGGA
EST: CAAGTTATAATGCTGCTTTGGCAGCTAGACCCATCTTGGAAGAACTTTCT GGTGTTCCTGCTACTATGGAAATTGCTAGTGATCTATTGGATCGGGAGGGA
genomic: CAAGTTATAATGCTGCTTTGGCAGCTAGACCCATATTGGAAGAACTTTCAggtcagtgct ... cattattataGGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGAGAGGGA
attaaaaagtatgcccattcttacaatgttttattttattttatacattattataGGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGAGAGGGACCAATATACCGGGAGGATACTGCCGTTTTTGTTAGTCAATCTGGTGAAA
ttcttac putative branch site (score: 2)
attcttacaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcagtgctgtatcctgtatgacaaatcttttttaagtttggctgattaaaaagtatgcccattcttacaatgttttattttattttatacattattataGGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGAGAGGGACCAATATACCGGGAGGATACTGCCGTTTTTGTTAGTCAATCTGGTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT