1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cacctagaatctttagaggctgatcttattattgtatattgtacgaaggaagatttgtatgtatcttatatatttcaacgaagtatttctttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCCTCGTAATCTTGCCAAGAGTGTCACAACGCAATAATGAAGTTTGTGGCAT
species | Glycine max |
transcript | GLYMA18G47860.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACA GTTATTGGCATACCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCCEST: gi|192311567|gb|FK003520.1|FK003520
genomic: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAggtatgttta ... ttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
EST: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACA GTTATTGGCATATCATCTCACTGTCCTCAGGGGACATAACGTCGACCAGCCEST: gi|208294097|gb|GE092614.1|GE092614
genomic: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAggtatgttta ... ttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
EST: CCACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACA GTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGGACCAGCCEST: gi|193400017|gb|FK367000.1|FK367000
genomic: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAggtatgttta ... ttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
EST: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACA GTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
genomic: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAggtatgttta ... ttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
aaggaagatttgtatgtatcttatatatttcaacgaagtatttctttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCCTCGTAATCTTGCCAAGAGTGTCACAACGCAATAATGAAGTTTGTGGCAT
tatttctttcc CT-rich tract
atttgtatgtatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacctagaatctttagaggctgatcttattattgtatattgtacgaaggaagatttgtatgtatcttatatatttcaacgaagtatttctttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCCTCGTAATCTTGCCAAGAGTGTCACAACGCAATAATGAAGTTTGTGGCAT
- - - - - - - - aggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt