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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATGCTTCCTCTGTATGCCCTAATGAATCTTGTAGGGTAATTGAAGTTCCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAggtatgtttacaaggctttttttttatcatttttactgctttattttatccttacagcgttgctacatttaacaaagggaaatcttcctatattagtgtc...

Basic information

species Glycine max
transcript GLYMA18G47860.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193718535|gb|FK649089.1|FK649089
EST:     CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACA                         GTTATTGGCATACCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
genomic: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAggtatgttta ... ttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
EST: gi|192311567|gb|FK003520.1|FK003520
EST:     CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACA                         GTTATTGGCATATCATCTCACTGTCCTCAGGGGACATAACGTCGACCAGCC
genomic: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAggtatgttta ... ttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
EST: gi|208294097|gb|GE092614.1|GE092614
EST:     CCACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACA                         GTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGGACCAGCC
genomic: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAggtatgttta ... ttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
EST: gi|193400017|gb|FK367000.1|FK367000
EST:     CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACA                         GTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC
genomic: CCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAggtatgttta ... ttccgatgcaGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCC